JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DUSP13_chr10_75089436_75104512	0/0	a0004	334	55	18	7	19	7	4	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	a0005	334	3	3	0	0	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	a0006	334	2	2	0	0	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP14_chr17_37484891_37518498	0/1	a0001	198	409	85	74	193	16	40	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	a0002	198	11	0	0	11	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	a0003	198	1	1	0	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP15_chr20_31856077_31875527	0/0	a0000	0	1	0	0	1	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	1/0	a0001	235	241	15	39	145	10	31	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/1	a0002	235	132	78	35	1	8	9	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	a0003	21	1	0	0	1	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	a0004	235	1	1	0	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	a0005	235	1	1	0	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	a0006	235	1	1	0	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP16_chr12_12468282_12567863	1/1	a0001	665	254	51	51	106	13	31	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	a0002	662	88	13	6	60	0	9	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	a0003	665	3	0	0	2	1	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	a0004	665	2	2	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	a0005	665	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	a0006	665	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	a0007	665	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	a0008	665	1	0	1	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	a0009	662	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP18_chr22_30656445_30672875	1/1	a0001	188	447	96	84	203	16	46	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	a0002	188	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP19_chr2_183073747_183105008	1/1	a0001	217	322	82	55	127	16	40	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	a0002	217	2	0	0	2	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	a0003	217	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	a0004	217	1	0	1	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	a0005	217	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	a0006	217	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP1_chr5_172763096_172776195	1/1	a0001	367	461	94	83	218	18	46	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	0/0	a0002	367	1	0	1	0	0	0	copy fasta	DUSP1	chr5	172763096	172776195
DUSP21_chrX_44839021_44849888	1/1	a0001	190	220	33	34	116	9	26	copy fasta	DUSP21	chrX	44839021	44849888
DUSP21_chrX_44839021_44849888	0/0	a0002	190	63	49	9	2	0	3	copy fasta	DUSP21	chrX	44839021	44849888
DUSP21_chrX_44839021_44849888	0/0	a0003	190	1	0	0	0	0	1	copy fasta	DUSP21	chrX	44839021	44849888
DUSP21_chrX_44839021_44849888	0/0	a0004	189	1	0	0	1	0	0	copy fasta	DUSP21	chrX	44839021	44849888
DUSP22_chr6_287487_356355	1/0	a0001	205	219	35	49	116	6	12	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	a0002	205	2	1	1	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP23_chr1_159775962_159787543	1/1	a0001	150	463	97	76	230	15	43	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	a0002	150	13	0	5	2	1	5	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	a0003	150	2	2	0	0	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	a0004	150	1	0	0	1	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	a0005	150	1	1	0	0	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	a0006	150	1	0	1	0	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	a0007	46	1	0	0	1	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP26_chr8_33586330_33605023	1/1	a0001	211	417	97	76	182	16	44	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	a0002	211	2	0	2	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	a0003	211	1	1	0	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP28_chr2_240555357_240570256	1/1	a0001	176	404	88	78	172	16	48	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	a0002	176	10	8	2	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256