JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DUSP28_chr2_240555357_240570256	0/0	a0003	176	3	0	0	3	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	a0004	168	2	0	2	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	a0005	176	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	a0006	176	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	a0007	176	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP29_chr10_75032472_75078642	1/1	a0001	220	193	31	40	89	14	17	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0002	220	132	45	15	63	1	8	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0003	220	28	10	5	2	0	11	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0004	219	3	3	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0005	220	3	0	2	0	1	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0006	220	2	0	2	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0007	220	2	2	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0008	220	1	1	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0009	220	1	1	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0010	220	1	0	0	1	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0011	220	1	0	0	1	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	a0012	220	1	1	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP2_chr2_96138169_96150440	1/1	a0001	314	418	92	77	191	12	44	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	a0002	314	2	2	0	0	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	a0003	314	1	0	1	0	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	a0004	314	1	0	0	1	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP3_chr17_43761125_43783977	1/1	a0001	185	364	90	80	140	12	40	copy fasta	DUSP3	chr17	43761125	43783977
DUSP4_chr8_29328064_29355684	1/1	a0001	394	389	98	78	159	12	40	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	a0002	394	2	2	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	a0003	394	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP5_chr10_110492907_110516533	0/1	a0001	384	371	71	67	184	12	36	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	a0002	384	13	1	3	9	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	1/0	a0003	384	13	10	2	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	a0004	384	7	6	1	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	a0005	384	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	a0006	384	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	a0007	384	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	a0008	384	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	a0009	384	1	0	1	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	a0010	384	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP6_chr12_89342235_89357501	0/0	a0001	381	166	27	25	94	4	16	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	1/1	a0002	381	147	27	27	76	2	13	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	a0003	381	82	42	23	8	1	8	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	a0004	381	3	0	1	0	1	1	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	a0005	381	2	0	2	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	a0006	381	2	0	0	2	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP7_chr3_52043919_52061571	1/1	a0001	419	372	80	61	187	8	34	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	a0002	419	7	4	3	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	a0003	419	3	0	0	3	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	a0004	419	2	0	2	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP8_chr11_1549051_1577271	0/1	a0001	625	352	85	64	149	15	38	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0002	625	2	0	2	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0003	625	2	0	0	2	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0004	625	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0005	625	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271