JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DVL2_chr17_7220342_7239517	0/0	a0008	736	1	0	1	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	a0009	736	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL3_chr3_184150377_184178614	1/1	a0001	716	388	93	76	161	16	40	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	a0002	711	6	0	0	6	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	a0003	716	2	0	0	0	0	2	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	a0004	716	1	0	0	0	0	1	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	a0005	716	1	0	0	1	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	a0006	716	1	1	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	a0007	716	1	0	0	0	0	1	copy fasta	DVL3	chr3	184150377	184178614
DXO_chr6_31964815_31977138	0/1	a0001	396	396	78	72	198	15	32	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	a0002	396	28	11	1	4	2	10	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	a0003	396	3	3	0	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	a0004	396	1	0	0	1	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	a0005	396	1	0	0	1	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	a0006	396	1	0	1	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	a0007	396	1	1	0	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	a0008	396	1	0	0	0	1	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	a0009	396	1	1	0	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DYDC1_chr10_80331105_80361755	1/1	a0001	177	364	87	77	144	10	44	copy fasta	DYDC1	chr10	80331105	80361755
DYDC1_chr10_80331105_80361755	0/0	a0002	177	1	1	0	0	0	0	copy fasta	DYDC1	chr10	80331105	80361755
DYDC1_chr10_80331105_80361755	0/0	a0003	158	1	0	1	0	0	0	copy fasta	DYDC1	chr10	80331105	80361755
DYDC2_chr10_80351781_80373073	1/1	a0001	177	379	87	75	158	11	46	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	a0002	177	4	4	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	a0003	177	4	0	3	0	1	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	a0004	177	1	1	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYM_chr18_49031387_49465645	1/1	a0001	724	285	64	57	119	14	29	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	a0002	724	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	a0003	724	1	0	0	1	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	a0004	724	1	0	0	0	0	1	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	a0005	724	1	0	1	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	a0006	724	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYNAP_chr18_54586245_54604493	0/0	a0001	184	175	43	36	71	5	20	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	1/1	a0002	184	134	32	31	52	6	11	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	a0003	184	43	18	8	7	3	7	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	a0004	184	3	3	0	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	a0005	184	1	0	0	1	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	a0006	184	1	0	0	1	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	a0007	184	1	0	1	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNC1H1_chr14_101959573_102061443	1/1	a0001	4646	237	62	39	112	5	17	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0002	4646	32	25	3	0	1	3	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0003	4646	4	0	0	4	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0004	4646	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0005	4646	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0006	4646	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0007	4646	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0008	4646	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0009	4646	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	a0010	4646	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1I1_chr7_95767554_96103424	1/1	a0001	628	225	79	42	74	6	22	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	a0002	628	4	4	0	0	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424