JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DYNC2H1_chr11_103104426_103484863	0/0	a0032	4307	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	a0033	4307	1	0	0	1	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	a0034	4307	1	0	0	0	0	1	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	a0035	4307	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	a0036	4307	1	0	0	1	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	a0037	4307	1	0	0	0	0	1	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2I1_chr7_158851558_158951189	0/0	a0001	1066	121	17	20	72	1	11	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/1	a0002	1066	99	16	24	44	3	11	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0003	1065	27	4	7	8	2	6	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0004	1066	6	6	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0005	1065	2	0	0	0	2	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0006	1066	2	2	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0007	1066	2	1	1	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0008	1066	2	2	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0009	1066	2	1	1	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0010	1065	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0011	1065	1	0	1	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0012	203	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0013	1066	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0014	1066	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0015	1066	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0016	1066	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0017	1066	1	0	0	0	1	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0018	1066	1	0	0	0	1	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	1/0	a0019	1066	1	0	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	a0020	1066	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I2_chr9_128628653_128661847	0/1	a0001	536	364	93	54	171	9	36	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	1/0	a0002	536	2	1	0	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	a0003	536	1	0	0	1	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	a0004	536	1	0	0	0	1	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2LI1_chr2_43769039_43815010	1/1	a0001	351	104	10	32	37	7	16	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0002	351	101	46	20	27	1	7	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0003	351	72	30	16	6	6	14	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0004	351	6	6	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0005	351	3	3	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0006	351	2	1	1	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0007	351	1	0	1	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0008	351	1	0	0	1	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0009	351	1	1	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0010	351	1	1	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0011	351	1	0	0	1	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	a0012	351	1	0	0	0	0	1	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNLL1_chr12_120491113_120503493	1/1	a0001	89	407	94	68	185	14	44	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	a0002	89	1	0	0	1	0	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL2_chr17_58078419_58100542	1/1	a0001	89	306	90	62	98	18	36	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLRB1_chr20_34511422_34545958	1/1	a0001	96	382	80	65	171	14	50	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB1_chr20_34511422_34545958	0/0	a0002	96	1	0	0	1	0	0	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB1_chr20_34511422_34545958	0/0	a0003	96	1	0	1	0	0	0	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB2_chr16_80535993_80555811	1/1	a0001	96	412	88	77	189	16	40	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	a0002	96	2	2	0	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811