JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DYNLRB2_chr16_80535993_80555811	0/0	a0003	96	1	0	1	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	a0004	96	1	0	0	1	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLT1_chr6_158631474_158649743	1/1	a0001	113	396	96	74	164	16	44	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT2B_chr3_196286219_196323240	1/1	a0001	142	328	94	63	111	16	42	copy fasta	DYNLT2B	chr3	196286219	196323240
DYNLT2B_chr3_196286219_196323240	0/0	a0002	142	1	0	0	1	0	0	copy fasta	DYNLT2B	chr3	196286219	196323240
DYNLT2B_chr3_196286219_196323240	0/0	a0003	142	1	0	1	0	0	0	copy fasta	DYNLT2B	chr3	196286219	196323240
DYNLT2_chr6_169735109_169756572	0/1	a0001	198	353	68	67	171	16	30	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/0	a0002	198	64	30	5	20	0	9	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/0	a0003	198	1	0	0	0	0	1	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/0	a0004	198	1	0	0	1	0	0	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT3_chrX_37833836_37852571	0/0	a0000	0	1	0	0	1	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	1/1	a0001	116	321	76	55	148	11	29	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	a0002	116	1	0	0	0	0	1	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	a0003	65	1	0	0	1	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT4_chr1_44800893_44812351	1/1	a0001	221	389	90	63	174	15	45	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	a0002	221	2	0	0	0	1	1	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	a0003	161	1	0	1	0	0	0	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT5_chr1_66747459_66784047	1/0	a0001	179	269	67	56	116	6	23	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/1	a0002	179	75	16	20	22	7	9	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	a0003	179	56	9	2	32	3	10	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	a0004	179	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	a0005	179	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYRK1A_chr21_37361773_37531358	1/1	a0001	754	349	88	63	134	18	44	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	a0002	754	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1B_chr19_39820350_39839162	1/1	a0001	629	369	92	80	144	15	36	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	a0002	629	1	0	0	0	0	1	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	a0003	629	1	0	0	0	1	0	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	a0004	629	1	0	0	0	0	1	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK2_chr12_67643745_67670406	1/1	a0001	601	384	85	67	182	14	34	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	a0002	601	3	1	2	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	a0003	601	1	0	1	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	a0004	601	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	a0005	601	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK3_chr1_206630536_206660158	1/1	a0001	588	384	82	73	171	18	38	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	a0002	588	3	3	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	a0003	588	2	2	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	a0004	588	2	0	1	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	a0005	588	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	a0006	588	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	a0007	588	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	a0008	588	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	a0009	588	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK4_chr12_4557208_4618875	1/0	a0001	634	337	65	54	172	13	32	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	a0002	634	46	5	2	31	0	8	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	a0003	634	10	7	3	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	a0004	634	9	9	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/1	a0005	634	4	1	1	0	1	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	a0006	634	4	4	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	a0007	634	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	a0008	634	1	0	0	1	0	0	copy fasta	DYRK4	chr12	4557208	4618875