JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DYRK4_chr12_4557208_4618875	0/0	a0009	376	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	a0010	634	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYSF_chr2_71448561_71691763	1/1	a0001	2080	151	48	31	50	4	16	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0002	2080	8	7	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0003	2080	5	4	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0004	2080	3	2	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0005	2080	2	2	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0006	2080	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0007	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0008	2080	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0009	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0010	2080	1	0	0	0	1	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0011	2080	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0012	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0013	2080	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0014	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0015	2080	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0016	2080	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0017	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0018	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0019	2080	1	0	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0020	2080	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0021	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0022	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0023	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0024	2080	1	0	0	0	1	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0025	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0026	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0027	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	a0028	2080	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71461699_71691763	1/1	a0001	2119	163	51	36	53	4	17	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0002	2119	8	7	0	1	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0003	2119	5	4	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0004	2119	3	2	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0005	2121	2	0	1	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0006	2119	2	2	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0007	2119	1	0	0	1	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0008	2119	1	0	0	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0009	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0010	2119	1	0	0	1	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0011	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0012	2119	1	0	0	0	1	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0013	2119	1	0	0	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0014	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0015	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0016	2119	1	0	0	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0017	2119	1	0	0	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0018	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0019	2119	1	0	0	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0020	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763