JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DYSF_chr2_71461699_71691763	0/0	a0021	2119	1	0	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0022	2119	1	0	0	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0023	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0024	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0025	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0026	2119	1	0	0	0	1	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0027	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0028	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0029	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0030	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	a0031	2119	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYTN_chr2_206646621_206723396	1/0	a0001	578	224	25	34	129	10	25	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/1	a0002	578	106	31	29	29	4	12	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0003	578	20	20	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0004	578	10	3	3	1	2	1	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0005	126	3	3	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0006	578	3	0	3	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0007	578	2	2	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0008	578	2	2	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0009	578	2	2	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0010	578	2	1	1	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0011	578	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0012	578	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0013	578	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0014	578	1	0	1	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0015	578	1	0	0	1	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0016	578	1	0	0	1	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0017	578	1	0	0	1	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	a0018	578	1	0	1	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DZANK1_chr20_18378367_18472030	1/1	a0001	777	186	60	36	69	2	17	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0002	777	84	9	21	36	8	10	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0003	777	57	0	7	38	5	7	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0004	777	10	10	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0005	777	10	0	4	5	0	1	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0006	777	7	1	0	5	0	1	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0007	777	5	0	2	3	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0008	777	4	4	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0009	777	2	0	1	0	1	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0010	777	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0011	777	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0012	777	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0013	777	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0014	777	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0015	777	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0016	777	1	0	1	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0017	777	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	a0018	777	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZIP1L_chr3_138056990_138120608	1/1	a0001	767	145	47	16	63	4	13	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0002	767	115	12	20	65	4	14	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0003	767	18	15	3	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608