JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DZIP1L_chr3_138056990_138120608	0/0	a0004	767	14	4	5	1	2	2	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0005	767	7	7	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0006	767	2	0	0	0	0	2	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0007	767	2	0	0	2	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0008	767	2	0	0	0	0	2	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0009	767	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0010	767	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0011	767	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0012	767	1	0	0	1	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0013	767	1	1	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0014	767	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	a0015	767	1	0	0	0	0	1	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1_chr13_95573202_95649706	1/1	a0001	867	234	50	40	115	7	20	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	a0002	867	80	27	9	27	6	11	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	a0003	867	60	5	9	42	2	2	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	a0004	867	3	3	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	a0005	867	2	2	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	a0006	867	2	0	0	0	1	1	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	a0007	867	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP3_chr3_108584722_108699840	1/1	a0001	1208	297	75	60	111	10	39	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	a0002	1208	8	7	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	a0003	1208	4	4	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	a0004	1208	4	3	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	a0005	1208	1	0	0	0	0	1	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	a0006	1208	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	a0007	1208	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	a0008	1208	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	a0009	1208	1	0	0	1	0	0	copy fasta	DZIP3	chr3	108584722	108699840
E2F1_chr20_33670477_33691385	1/1	a0001	437	366	90	65	151	16	42	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	a0002	437	4	1	0	0	2	1	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	a0003	437	3	0	0	3	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	a0004	437	3	0	0	3	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	a0005	437	2	2	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	a0006	437	1	0	0	0	0	1	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	a0007	437	1	1	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	a0008	437	1	0	1	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	a0009	437	1	0	0	1	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F2_chr1_23501438_23536233	1/1	a0001	437	243	90	50	66	9	26	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	a0002	437	145	2	25	104	3	11	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	a0003	437	3	3	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	a0004	437	2	1	1	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	a0005	437	2	0	1	0	0	1	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	a0006	437	1	0	1	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F3_chr6_20396879_20498714	1/1	a0001	465	323	89	55	127	11	39	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	a0002	462	4	3	1	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	a0003	465	3	3	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	a0004	465	3	3	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	a0005	465	2	0	0	1	0	1	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	a0006	465	1	0	0	0	1	0	copy fasta	E2F3	chr6	20396879	20498714
E2F4_chr16_67187155_67203918	1/1	a0001	413	289	72	58	109	11	37	copy fasta	E2F4	chr16	67187155	67203918