JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADH1B_chr4_99299971_99326401	0/1	a0001	375	267	78	61	70	16	41	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	1/0	a0002	375	72	0	6	64	0	1	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	a0003	375	20	16	4	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	a0004	375	2	1	0	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	a0005	375	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	a0006	375	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	a0007	375	1	0	0	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1C_chr4_99331497_99357746	1/1	a0001	375	289	85	47	116	14	25	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	a0002	375	65	12	22	17	2	12	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	a0003	77	3	0	2	0	0	1	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	a0004	375	1	1	0	0	0	0	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	a0005	375	1	0	1	0	0	0	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	a0006	375	1	0	0	1	0	0	copy fasta	ADH1C	chr4	99331497	99357746
ADH4_chr4_99118658_99149297	0/0	a0001	380	291	77	53	128	10	23	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	1/1	a0002	380	35	10	18	0	4	1	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	a0003	380	4	0	0	4	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	a0004	380	2	2	0	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	a0005	380	1	1	0	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	a0006	380	1	0	1	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	a0007	380	1	0	0	1	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	a0008	380	1	0	0	1	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	a0009	380	1	0	0	0	0	1	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	a0010	380	1	0	0	0	0	1	copy fasta	ADH4	chr4	99118658	99149297
ADH5_chr4_99065978_99093788	1/1	a0001	374	331	82	69	132	14	32	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	a0002	374	4	4	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	a0003	374	1	0	1	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH6_chr4_99197639_99224246	1/1	a0001	375	302	80	67	111	8	34	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	a0002	375	7	7	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	a0003	62	1	1	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	a0004	375	1	0	1	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	a0005	375	1	0	0	1	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH7_chr4_99407263_99440342	1/1	a0001	374	375	69	67	182	11	44	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0002	374	20	19	1	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0003	374	7	0	6	0	1	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0004	374	2	2	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0005	374	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0006	374	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0007	374	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0008	374	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0009	374	1	0	1	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0010	374	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0011	374	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0012	374	1	0	1	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0013	374	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0014	374	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0015	374	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	a0016	374	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADHFE1_chr8_66427504_66473907	0/1	a0001	467	225	63	53	80	5	23	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	1/0	a0002	467	174	29	20	100	5	19	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	a0003	378	1	0	1	0	0	0	copy fasta	ADHFE1	chr8	66427504	66473907