JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
E2F4_chr16_67187155_67203918	0/0	a0002	416	8	7	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	a0003	414	7	2	3	2	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	a0004	410	4	4	0	0	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	a0005	417	4	3	0	0	0	1	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	a0006	411	3	1	1	0	1	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	a0007	415	3	3	0	0	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	a0008	413	1	0	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	a0009	413	1	0	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F5_chr8_85172154_85219518	1/1	a0001	346	320	76	51	143	11	37	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	a0002	346	13	6	5	0	1	1	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	a0003	120	1	0	0	1	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	a0004	346	1	1	0	0	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	a0005	346	1	1	0	0	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F6_chr2_11439375_11471161	1/1	a0001	281	366	88	74	156	10	36	copy fasta	E2F6	chr2	11439375	11471161
E2F7_chr12_77016251_77070569	0/1	a0001	911	327	56	68	161	8	33	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	1/0	a0002	911	40	32	4	0	0	3	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0003	911	11	1	7	0	1	2	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0004	911	5	0	0	5	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0005	911	2	0	0	0	1	1	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0006	911	2	0	0	2	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0007	911	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0008	911	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0009	911	1	0	0	1	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0010	911	1	0	0	0	0	1	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0011	911	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0012	911	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	a0013	911	1	0	0	1	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F8_chr11_19219063_19245945	1/1	a0001	867	416	88	74	194	17	41	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0002	867	6	6	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0003	867	5	0	0	5	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0004	867	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0005	867	1	0	0	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0006	867	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0007	867	1	0	0	0	1	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0008	867	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0009	867	1	0	0	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0010	867	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0011	867	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0012	867	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0013	867	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	a0014	867	1	0	0	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E4F1_chr16_2218591_2240742	0/1	a0001	784	368	83	73	151	16	44	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0002	784	11	10	1	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0003	784	2	0	0	0	0	2	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0004	784	2	0	0	2	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0005	784	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0006	277	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0007	784	1	0	0	1	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0008	784	1	0	0	0	0	1	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0009	556	1	0	0	0	0	1	copy fasta	E4F1	chr16	2218591	2240742