JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
E4F1_chr16_2218591_2240742	0/0	a0010	784	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	1/0	a0011	784	1	0	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0012	784	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	a0013	784	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
EAF1_chr3_15422598_15447613	1/1	a0001	268	412	98	69	186	11	46	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	a0002	268	3	0	0	3	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	a0003	151	1	0	1	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	a0004	268	1	0	0	0	1	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	a0005	268	1	0	0	1	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF2_chr3_121830209_121891526	1/1	a0001	260	311	82	72	103	14	38	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	a0002	260	3	0	0	3	0	0	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	a0003	260	2	2	0	0	0	0	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	a0004	260	2	2	0	0	0	0	copy fasta	EAF2	chr3	121830209	121891526
EAPP_chr14_34510938_34544701	1/1	a0001	285	340	77	60	149	13	39	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	a0002	285	19	15	1	1	1	1	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	a0003	285	1	0	1	0	0	0	copy fasta	EAPP	chr14	34510938	34544701
EARS2_chr16_23515754_23562350	0/1	a0001	523	192	51	42	61	9	28	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	1/0	a0002	523	85	19	8	40	7	10	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	a0003	523	2	0	0	2	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	a0004	523	2	2	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	a0005	523	2	1	1	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	a0006	523	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	a0007	523	1	0	0	1	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	a0008	523	1	0	1	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EBAG9_chr8_109535173_109570996	1/1	a0001	213	356	96	74	132	16	36	copy fasta	EBAG9	chr8	109535173	109570996
EBF1_chr5_158690920_159104916	0/0	a0001	591	194	80	50	46	10	8	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	a0002	591	2	2	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF2_chr8_25836725_26050413	1/1	a0001	575	203	57	46	64	12	22	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	a0002	575	17	17	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF3_chr10_129830233_129969274	1/1	a0001	629	336	92	58	136	12	36	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	a0002	629	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF4_chr20_2687780_2765108	1/1	a0001	602	387	92	66	167	16	44	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	a0002	602	1	0	0	1	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBI3_chr19_4224523_4242528	1/1	a0001	229	254	42	57	114	9	30	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	a0002	229	182	48	23	84	7	20	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	a0003	229	1	1	0	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	a0004	229	1	1	0	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBLN1_chr10_22203475_22223015	0/0	a0001	366	275	25	45	157	15	33	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/1	a0002	367	107	30	23	45	3	5	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0003	367	18	16	2	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0004	366	15	13	2	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0005	367	3	3	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0006	367	3	3	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0007	366	2	0	0	2	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0008	367	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0009	57	1	0	1	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0010	366	1	0	0	1	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0011	366	1	0	0	1	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0012	367	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0013	367	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015