JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EBLN1_chr10_22203475_22223015	0/0	a0014	265	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	a0015	231	1	0	1	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	1/0	a0016	366	1	0	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN2_chr3_73056659_73068337	1/0	a0001	272	202	39	47	101	3	11	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	a0002	100	106	8	5	77	2	14	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/1	a0003	272	96	48	17	13	2	15	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	a0004	272	9	0	7	2	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	a0005	101	5	0	2	0	1	2	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	a0006	100	3	0	0	3	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	a0007	222	3	3	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	a0008	272	2	0	0	0	0	2	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	a0009	272	2	2	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBNA1BP2_chr1_43159184_43177290	1/0	a0001	306	340	82	59	155	9	34	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/1	a0002	306	48	13	16	0	7	11	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	a0003	306	2	1	1	0	0	0	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	a0004	306	1	0	0	0	0	1	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	a0005	306	1	0	0	1	0	0	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBPL_chr13_49655674_49696486	1/1	a0001	206	409	96	82	171	10	48	copy fasta	EBPL	chr13	49655674	49696486
EBPL_chr13_49655674_49696486	0/0	a0002	91	1	0	0	1	0	0	copy fasta	EBPL	chr13	49655674	49696486
EBP_chrX_48516808_48533716	1/1	a0001	230	305	80	53	131	7	32	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	a0002	230	2	0	0	2	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	a0003	230	2	2	0	0	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	a0004	136	1	0	0	1	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	a0005	114	1	0	0	1	0	0	copy fasta	EBP	chrX	48516808	48533716
ECD_chr10_73128668_73173008	1/1	a0001	644	162	49	20	73	0	18	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	a0002	644	82	14	8	51	0	9	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	a0003	644	21	19	2	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	a0004	644	2	0	0	2	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	a0005	644	1	0	0	1	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	a0006	644	1	1	0	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	a0007	644	1	0	0	1	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	a0008	644	1	1	0	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	a0009	644	1	0	0	0	0	1	copy fasta	ECD	chr10	73128668	73173008
ECE1_chr1_21212250_21295463	1/1	a0001	770	290	91	50	103	12	32	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0002	770	6	0	2	0	2	2	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0003	770	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0004	770	1	0	1	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0005	770	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0006	770	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0007	770	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0008	770	1	0	1	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0009	770	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	a0010	770	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE2_chr3_184271022_184298031	1/1	a0001	765	377	70	68	176	16	45	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	a0002	765	15	12	3	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	a0003	765	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	a0004	765	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	a0005	765	1	0	0	0	0	1	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	a0006	765	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	a0007	765	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031