JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ECE2_chr3_184271022_184298031	0/0	a0008	765	1	0	1	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECEL1_chr2_232474827_232492834	0/1	a0001	775	391	82	63	181	18	46	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0002	775	15	0	0	11	0	4	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	1/0	a0003	775	13	9	3	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0004	775	3	0	0	3	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0005	775	3	0	3	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0006	775	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0007	775	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0008	775	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0009	775	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0010	775	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0011	775	1	0	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0012	775	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0013	775	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0014	775	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0015	775	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0016	775	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0017	775	1	0	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	a0018	775	1	0	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECH1_chr19_38810422_38836794	1/0	a0001	328	228	71	30	98	6	22	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/1	a0002	328	134	19	38	53	9	14	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0003	328	28	0	9	14	1	4	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0004	328	21	0	1	17	0	3	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0005	328	3	0	0	3	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0006	328	1	0	0	1	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0007	328	1	1	0	0	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0008	147	1	0	0	1	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0009	328	1	0	0	0	0	1	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0010	328	1	0	0	1	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	a0011	328	1	1	0	0	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECHDC1_chr6_127283712_127348609	1/1	a0001	301	358	98	60	140	16	42	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC2_chr1_52890910_52926740	1/1	a0001	292	309	85	50	134	6	32	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	a0002	292	3	3	0	0	0	0	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	a0003	292	2	2	0	0	0	0	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC3_chr10_11737382_11769070	0/0	a0001	303	330	47	58	181	12	32	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	1/0	a0002	303	33	30	2	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/1	a0003	303	28	4	9	4	5	5	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0004	303	12	1	5	0	1	5	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0005	303	7	0	0	7	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0006	303	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0007	303	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0008	303	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0009	303	1	1	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0010	303	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0011	303	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0012	303	1	1	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	a0013	303	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHS1_chr10_133357485_133378354	0/1	a0001	290	218	18	56	103	15	25	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	a0002	290	65	22	15	20	2	6	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	1/0	a0003	290	60	52	3	1	0	3	copy fasta	ECHS1	chr10	133357485	133378354