JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ECHS1_chr10_133357485_133378354	0/0	a0004	290	7	6	0	1	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	a0005	290	1	0	1	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	a0006	290	1	0	0	0	1	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	a0007	290	1	0	0	1	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	a0008	290	1	0	1	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECI1_chr16_2234402_2256587	1/1	a0001	302	419	97	74	195	11	40	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	a0002	302	6	0	2	0	3	1	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	a0003	302	3	0	0	0	0	3	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	a0004	302	2	1	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	a0005	302	2	0	0	0	0	2	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	a0006	302	1	0	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	a0007	302	1	0	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	a0008	233	1	0	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	a0009	302	1	0	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI2_chr6_4110706_4140575	1/1	a0001	394	218	58	41	89	4	24	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0002	394	107	18	17	65	3	4	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0003	394	32	8	13	2	5	4	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0004	394	4	0	0	4	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0005	394	3	0	0	3	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0006	394	2	2	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0007	394	1	1	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0008	394	1	0	0	1	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0009	394	1	0	1	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	a0010	394	1	1	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECM1_chr1_150503109_150518789	1/1	a0001	540	301	77	55	131	11	25	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	a0002	540	94	2	20	49	5	18	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	a0003	540	18	15	3	0	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	a0004	540	4	0	0	0	0	4	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	a0005	540	1	0	0	1	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	a0006	540	1	0	0	1	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	a0007	540	1	0	0	0	0	1	copy fasta	ECM1	chr1	150503109	150518789
ECM2_chr9_92490315_92540990	0/1	a0001	699	269	71	45	117	11	24	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	1/0	a0002	699	96	5	25	50	4	11	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0003	699	20	1	1	13	1	4	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0004	699	3	2	0	0	0	1	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0005	699	2	0	2	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0006	699	2	1	0	1	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0007	699	2	2	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0008	699	2	0	0	0	2	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0009	699	1	0	1	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0010	699	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0011	699	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	a0012	699	1	0	0	1	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECPAS_chr9_111355685_111489383	1/0	a0001	1839	202	40	42	95	8	16	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/1	a0002	1839	122	35	17	44	6	19	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	a0003	1839	20	0	1	17	0	2	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	a0004	1839	4	4	0	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	a0005	1839	2	2	0	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	a0006	1839	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	a0007	1839	1	0	0	0	0	1	copy fasta	ECPAS	chr9	111355685	111489383