JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ECPAS_chr9_111355685_111489383	0/0	a0008	1839	1	1	0	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	a0009	1839	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECRG4_chr2_106060688_106083155	1/1	a0001	148	423	85	78	197	16	45	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	a0002	148	9	9	0	0	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	a0003	148	1	0	0	1	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	a0004	112	1	0	0	0	0	1	copy fasta	ECRG4	chr2	106060688	106083155
ECSCR_chr5_139443560_139467743	0/1	a0001	205	368	84	70	163	16	34	copy fasta	ECSCR	chr5	139443560	139467743
ECSCR_chr5_139443560_139467743	0/0	a0002	205	1	0	0	1	0	0	copy fasta	ECSCR	chr5	139443560	139467743
ECSIT_chr19_11500929_11534134	1/1	a0001	431	293	94	59	94	10	34	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	a0002	431	9	0	0	9	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	a0003	431	3	0	0	3	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	a0004	431	2	0	0	0	0	2	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	a0005	431	1	0	1	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	a0006	431	1	0	1	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	a0007	431	1	0	1	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	a0008	431	1	1	0	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	a0009	431	1	1	0	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECT2L_chr6_138791087_138909070	1/1	a0001	904	196	32	41	93	10	18	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0002	904	71	9	10	39	2	11	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0003	904	9	8	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0004	904	8	8	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0005	904	6	6	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0006	904	5	5	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0007	904	5	4	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0008	904	4	3	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0009	904	4	3	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0010	904	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0011	904	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0012	904	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0013	904	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0014	904	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0015	904	1	0	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0016	904	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0017	560	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0018	904	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0019	904	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0020	904	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0021	904	1	0	0	0	0	1	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0022	754	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0023	904	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	a0024	904	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2_chr3_172745726_172826474	1/1	a0001	914	302	69	45	132	16	38	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	a0002	914	6	6	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	a0003	914	4	4	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	a0004	914	2	2	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	a0005	914	1	0	0	1	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	a0006	914	1	1	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	a0007	914	1	0	1	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	a0008	914	1	0	0	1	0	0	copy fasta	ECT2	chr3	172745726	172826474
EDA2R_chrX_66590637_66644078	0/1	a0001	297	138	2	25	87	5	18	copy fasta	EDA2R	chrX	66590637	66644078