JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EDA2R_chrX_66590637_66644078	0/0	a0002	297	61	43	12	0	2	4	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	1/0	a0003	297	21	19	1	0	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	a0004	297	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	a0005	271	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDARADD_chr1_236389286_236489930	0/1	a0001	215	222	35	37	105	6	38	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	1/0	a0002	215	68	39	17	7	1	3	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	a0003	215	4	0	2	0	1	1	copy fasta	EDARADD	chr1	236389286	236489930
EDAR_chr2_108889471_108994220	1/1	a0001	448	183	77	40	20	12	32	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	a0002	448	36	0	14	22	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	a0003	448	3	3	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	a0004	448	2	0	0	2	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	a0005	448	1	0	0	1	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	a0006	448	1	0	0	1	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDA_chrX_69611113_70044472	0/0	a0001	391	224	60	52	72	11	29	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	a0002	391	1	0	0	0	0	1	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	a0003	391	1	0	0	1	0	0	copy fasta	EDA	chrX	69611113	70044472
EDC3_chr15_74625558_74701024	1/1	a0001	508	284	70	41	140	11	20	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	a0002	508	1	0	1	0	0	0	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	a0003	508	1	0	0	0	1	0	copy fasta	EDC3	chr15	74625558	74701024
EDC4_chr16_67868052_67889499	1/1	a0001	1401	239	88	48	62	10	29	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	a0002	1401	1	0	0	0	0	1	copy fasta	EDC4	chr16	67868052	67889499
EDDM13_chr19_56267748_56315454	1/1	a0001	161	390	91	76	163	14	44	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	a0002	161	2	2	0	0	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	a0003	161	1	0	0	1	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	a0004	39	1	0	0	1	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	a0005	159	1	0	0	1	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	a0006	152	1	1	0	0	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM3A_chr14_20740887_20753380	1/1	a0001	147	386	85	69	176	16	38	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	a0002	147	56	7	10	30	2	7	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	a0003	147	2	2	0	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	a0004	147	1	0	1	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	a0005	147	1	0	0	0	0	1	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3B_chr14_20763404_20775948	1/0	a0001	147	373	72	67	170	17	46	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/1	a0002	147	104	25	17	58	1	2	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	a0003	147	3	3	0	0	0	0	copy fasta	EDDM3B	chr14	20763404	20775948
EDEM1_chr3_5182707_5224958	1/1	a0001	657	361	92	66	149	14	38	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	a0002	657	8	0	0	8	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	a0003	657	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	a0004	657	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	a0005	657	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	a0006	657	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	a0007	657	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM2_chr20_35110364_35152336	1/1	a0001	578	292	90	52	110	8	30	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	a0002	578	28	1	6	13	4	4	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	a0003	578	8	4	4	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	a0004	578	1	0	0	1	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	a0005	578	1	1	0	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	a0006	578	1	0	1	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	a0007	578	1	0	1	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM3_chr1_184685237_184759858	1/1	a0001	932	211	83	37	73	6	10	copy fasta	EDEM3	chr1	184685237	184759858