JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EDEM3_chr1_184685237_184759858	0/0	a0002	932	102	3	17	66	6	10	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	a0003	932	4	0	0	4	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	a0004	932	3	0	0	3	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	a0005	932	2	0	0	2	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	a0006	932	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	a0007	932	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDF1_chr9_136857119_136871308	1/1	a0001	148	377	90	78	148	16	43	copy fasta	EDF1	chr9	136857119	136871308
EDF1_chr9_136857119_136871308	0/0	a0002	148	1	0	0	0	0	1	copy fasta	EDF1	chr9	136857119	136871308
EDIL3_chr5_83935554_84389880	1/1	a0001	480	156	48	41	38	8	19	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	a0002	480	1	0	1	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	a0003	480	1	0	0	0	0	1	copy fasta	EDIL3	chr5	83935554	84389880
EDN1_chr6_12285361_12302194	1/1	a0001	212	334	81	77	146	11	17	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	a0002	212	114	15	9	63	3	24	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	a0003	212	3	0	0	3	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	a0004	212	1	0	0	0	0	1	copy fasta	EDN1	chr6	12285361	12302194
EDN2_chr1_41473775_41489683	1/1	a0001	178	433	94	78	200	18	41	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	a0002	178	2	0	0	2	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	a0003	178	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	a0004	178	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	a0005	178	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	a0006	178	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	a0007	159	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	a0008	178	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	a0009	178	1	0	0	0	0	1	copy fasta	EDN2	chr1	41473775	41489683
EDN3_chr20_59295611_59330992	1/1	a0001	238	395	94	56	179	16	48	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	a0002	238	2	1	0	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	a0003	238	1	1	0	0	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDNRA_chr4_147476097_147549954	1/1	a0001	427	277	93	40	109	4	29	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	a0002	427	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	a0003	420	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	a0004	427	1	0	0	0	0	1	copy fasta	EDNRA	chr4	147476097	147549954
EDNRB_chr13_77890487_77923831	1/1	a0001	442	400	89	65	186	16	42	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	a0002	442	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	a0003	442	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	a0004	442	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	a0005	442	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	a0006	442	1	0	1	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	a0007	442	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDRF1_chr10_125714709_125769139	1/1	a0001	1238	273	70	66	104	9	22	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	a0002	1238	30	0	2	22	1	5	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	a0003	1238	12	11	0	0	0	1	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	a0004	1238	4	4	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	a0005	1238	2	2	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	a0006	1238	1	1	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EEA1_chr12_92765637_92934295	0/0	a0001	1411	136	45	37	20	7	27	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	1/1	a0002	1411	80	46	14	5	5	8	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	a0003	1411	10	1	2	6	1	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	a0004	1411	6	3	1	0	1	1	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	a0005	1411	5	0	0	5	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	a0006	1411	4	0	2	2	0	0	copy fasta	EEA1	chr12	92765637	92934295