JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EEA1_chr12_92765637_92934295	0/0	a0007	1411	1	0	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	a0008	1411	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	a0009	1411	1	0	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EED_chr11_86239753_86283810	1/1	a0001	441	391	84	60	189	14	42	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/0	a0002	441	1	0	0	1	0	0	copy fasta	EED	chr11	86239753	86283810
EEF1A1_chr6_73510750_73526032	1/1	a0001	462	421	96	67	203	17	36	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	a0002	462	1	0	0	0	1	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	a0003	462	1	0	0	1	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	a0004	462	1	0	1	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A2_chr20_63483014_63504083	1/1	a0001	463	372	87	80	145	16	42	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	a0002	463	1	0	0	1	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	a0003	463	1	1	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1AKMT1_chr13_20723731_20778961	1/1	a0001	214	348	90	56	138	18	44	copy fasta	EEF1AKMT1	chr13	20723731	20778961
EEF1AKMT2_chr10_124752834_124796887	1/0	a0001	291	345	80	38	177	11	38	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/1	a0002	291	8	0	2	0	3	2	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	a0003	291	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	a0004	291	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	a0005	291	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	a0006	291	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	a0007	68	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT3_chr12_57767614_57787541	1/1	a0001	226	361	90	76	139	14	40	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	a0002	226	1	0	0	1	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT4_chr3_184244672_184263759	0/0	a0001	255	292	60	44	145	10	33	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/1	a0002	255	56	24	18	3	3	7	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	a0003	255	23	2	7	8	2	4	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	a0004	255	3	3	0	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	1/0	a0005	255	2	0	1	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	a0006	255	1	1	0	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	a0007	255	1	0	0	0	1	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1B2_chr2_206154895_206167928	1/1	a0001	225	354	82	64	157	12	37	copy fasta	EEF1B2	chr2	206154895	206167928
EEF1B2_chr2_206154895_206167928	0/0	a0002	225	6	0	2	3	0	1	copy fasta	EEF1B2	chr2	206154895	206167928
EEF1D_chr8_143574728_143602415	0/1	a0001	647	316	64	63	144	8	36	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0002	647	37	4	5	26	0	2	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0003	647	13	13	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0004	647	9	8	1	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0005	647	2	0	0	0	0	2	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0006	647	2	0	2	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0007	647	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0008	647	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0009	647	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0010	647	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0011	647	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0012	647	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0013	647	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0014	647	1	0	1	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0015	647	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	a0016	647	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1E1_chr6_8074395_8107548	1/1	a0001	174	438	94	82	206	14	40	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	a0002	174	2	0	0	2	0	0	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	a0003	174	2	0	0	2	0	0	copy fasta	EEF1E1	chr6	8074395	8107548