JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EEF1G_chr11_62554596_62578891	1/1	a0001	437	261	80	60	81	12	26	copy fasta	EEF1G	chr11	62554596	62578891
EEF1G_chr11_62554596_62578891	0/0	a0002	437	1	0	0	1	0	0	copy fasta	EEF1G	chr11	62554596	62578891
EEF2KMT_chr16_5079284_5102795	0/0	a0001	330	193	8	32	112	12	29	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	1/1	a0002	330	168	71	31	47	3	14	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0003	330	58	7	19	28	1	3	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0004	330	5	4	1	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0005	330	5	5	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0006	330	4	0	0	4	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0007	330	2	2	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0008	330	2	2	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0009	330	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0010	330	1	0	1	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0011	330	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0012	330	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	a0013	330	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2K_chr16_22201278_22293738	0/1	a0001	725	198	64	37	68	7	21	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0002	725	48	0	9	30	0	9	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0003	725	36	28	2	6	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0004	725	1	0	0	0	0	1	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	1/0	a0005	725	1	0	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0006	725	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0007	725	1	0	0	0	1	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0008	725	1	0	0	0	0	1	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0009	725	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0010	725	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	a0011	725	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2_chr19_3971056_3990463	1/0	a0001	858	401	96	78	166	14	46	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	a0002	858	1	0	0	1	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	a0003	858	1	0	0	1	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEFSEC_chr3_128148481_128413646	1/1	a0001	596	260	59	52	106	12	29	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	a0002	596	5	5	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	a0003	596	5	5	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	a0004	596	1	0	0	0	0	1	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	a0005	596	1	1	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEIG1_chr9_127935582_127985989	1/1	a0001	384	342	90	44	156	8	42	copy fasta	EEIG1	chr9	127935582	127985989
EEIG2_chr1_108555100_108644322	1/1	a0001	360	272	76	54	116	0	24	copy fasta	EEIG2	chr1	108555100	108644322
EEPD1_chr7_36148254_36306538	0/1	a0001	569	295	63	59	124	12	36	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	1/0	a0002	569	31	15	4	8	0	3	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	a0003	569	17	2	7	5	0	3	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	a0004	569	3	0	0	3	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EFCAB10_chr7_105560124_105586493	1/1	a0001	131	427	91	78	194	18	44	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	a0002	131	1	1	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB11_chr14_89789669_89959730	1/1	a0001	163	265	68	49	102	8	36	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	a0002	163	13	10	3	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	a0003	163	3	3	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	a0004	163	2	2	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	a0005	163	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB12_chr3_129396321_129433636	1/0	a0001	572	177	31	44	62	13	26	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0002	572	91	12	13	61	0	5	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0003	572	32	2	2	27	0	1	copy fasta	EFCAB12	chr3	129396321	129433636