JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADHFE1_chr8_66427504_66473907	0/0	a0004	467	1	1	0	0	0	0	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	a0005	467	1	1	0	0	0	0	copy fasta	ADHFE1	chr8	66427504	66473907
ADI1_chr2_3492366_3524531	1/1	a0001	179	371	93	66	158	14	38	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	a0002	179	11	0	0	11	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	a0003	179	3	0	0	3	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	a0004	179	2	0	0	2	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	a0005	179	2	0	2	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	a0006	72	1	0	0	1	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	a0007	179	1	1	0	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	a0008	179	1	0	0	1	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADIG_chr20_38576197_38593463	1/1	a0001	80	371	93	60	160	14	42	copy fasta	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	a0002	80	1	1	0	0	0	0	copy fasta	ADIG	chr20	38576197	38593463
ADIPOQ_chr3_186837710_186863463	1/1	a0001	244	479	98	84	231	16	48	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	a0002	244	2	2	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	a0003	244	2	0	0	2	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	a0004	244	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOR1_chr1_202935832_202963312	1/1	a0001	375	442	90	78	218	14	40	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR2_chr12_1686070_1793674	1/1	a0001	386	369	81	74	168	14	30	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	a0002	386	5	5	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	a0003	386	2	0	0	0	0	2	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	a0004	386	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	a0005	386	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIRF_chr10_86963482_86975915	1/1	a0001	76	408	94	78	172	18	44	copy fasta	ADIRF	chr10	86963482	86975915
ADISSP_chr20_3748508_3772753	1/1	a0001	174	444	98	80	198	18	48	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	a0002	174	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	a0003	174	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADK_chr10_74146221_74714290	1/1	a0001	362	199	76	38	61	4	18	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	0/0	a0002	362	1	0	0	1	0	0	copy fasta	ADK	chr10	74146221	74714290
ADM2_chr22_50476543_50491437	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	1/1	a0001	148	366	86	69	149	16	44	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	a0002	142	73	13	13	40	2	5	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	a0003	148	2	0	0	1	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	a0004	142	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	a0005	148	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	a0006	143	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	a0007	148	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM5_chr19_49684594_49695575	1/1	a0001	153	386	92	78	152	14	48	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	a0002	153	4	0	0	4	0	0	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	a0003	153	2	0	0	0	0	2	copy fasta	ADM5	chr19	49684594	49695575
ADM_chr11_10300073_10312397	1/1	a0001	185	390	80	67	182	17	42	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	a0002	185	14	10	3	0	1	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	a0003	185	3	3	0	0	0	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	a0004	185	1	1	0	0	0	0	copy fasta	ADM	chr11	10300073	10312397
ADNP2_chr18_80104262_80145346	1/1	a0001	1131	381	85	72	170	11	41	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	a0002	1131	1	0	0	0	1	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	a0003	533	1	0	1	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	a0004	1131	1	0	0	0	0	1	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	a0005	1131	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	a0006	1131	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	a0007	1131	1	1	0	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346