JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EFCAB12_chr3_129396321_129433636	0/1	a0004	572	23	7	6	3	2	4	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0005	572	16	7	1	3	0	5	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0006	572	15	11	4	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0007	572	6	0	4	0	1	1	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0008	572	6	6	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0009	572	5	4	1	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0010	572	4	4	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0011	572	2	2	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0012	572	2	2	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0013	572	2	2	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0014	572	1	0	1	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0015	572	1	1	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0016	572	1	0	0	1	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0017	572	1	1	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	a0018	572	1	0	0	1	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB13_chr17_47318955_47446312	0/1	a0001	281	138	36	30	48	6	17	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	1/0	a0002	973	82	21	16	31	4	9	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0003	973	39	7	4	27	1	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0004	973	38	3	7	22	1	5	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0005	210	27	0	1	20	0	6	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0006	973	9	0	0	9	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0007	973	6	0	0	6	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0008	973	4	4	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0009	973	4	0	0	4	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0010	973	2	0	0	2	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0011	210	1	0	1	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0012	281	1	1	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0013	973	1	0	0	1	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0014	973	1	0	1	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0015	973	1	0	0	0	0	1	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0016	973	1	1	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	a0017	973	1	1	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB14_chr1_46670159_46724114	1/1	a0001	495	361	80	58	167	12	42	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	a0002	495	6	6	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	a0003	495	5	5	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	a0004	495	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	a0005	495	1	0	0	1	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB2_chr1_244964682_245092837	1/1	a0001	162	289	82	48	125	10	22	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	a0002	162	1	0	0	1	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB3_chr17_62375553_62421480	0/0	a0001	438	325	95	59	137	14	20	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	a0002	438	38	0	10	22	0	6	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	a0003	438	2	2	0	0	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	a0004	438	1	0	0	1	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	a0005	98	1	0	1	0	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	a0006	438	1	1	0	0	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB5_chr17_29936634_30113452	0/1	a0001	1503	121	39	28	30	7	16	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0002	1503	78	8	25	27	3	15	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0003	25	23	18	3	0	2	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0004	1502	6	6	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0005	1503	3	3	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452