JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EFCAB5_chr17_29936634_30113452	0/0	a0006	1503	3	3	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0007	950	3	3	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0008	1503	2	2	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0009	1503	2	0	2	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	1/0	a0010	1503	1	0	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0011	1503	1	0	0	0	1	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0012	1503	1	1	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0013	1503	1	0	0	0	1	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0014	1503	1	1	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0015	1503	1	0	0	1	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	a0016	1503	1	0	0	0	0	1	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB6_chr22_43523778_43817305	0/0	a0001	1501	93	21	17	42	2	11	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0002	1501	40	28	6	2	1	3	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/1	a0003	1501	33	0	4	21	2	5	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0004	1501	28	0	1	20	2	5	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0005	1501	21	1	3	12	2	3	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0006	1501	15	5	5	1	4	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0007	1501	14	13	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0008	1501	8	0	1	7	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0009	1501	5	5	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0010	1501	5	0	3	0	2	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0011	1501	3	0	3	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0012	1501	3	0	1	0	1	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0013	1501	2	2	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0014	1501	2	0	0	0	0	2	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0015	1501	1	0	0	0	0	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0016	1501	1	0	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0017	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0018	1501	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0019	1501	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0020	1501	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0021	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0022	1501	1	0	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0023	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0024	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	1/0	a0025	1501	1	0	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0026	1501	1	0	0	0	0	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0027	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0028	1501	1	0	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0029	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0030	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0031	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	a0032	1501	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB7_chr1_63518525_63577693	1/1	a0001	629	234	27	54	121	5	25	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0002	629	66	5	15	38	1	7	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0003	629	39	30	3	3	0	3	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0004	629	9	7	2	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0005	629	6	5	1	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0006	629	5	5	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0007	629	4	4	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693