JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EFCAB7_chr1_63518525_63577693	0/0	a0008	629	3	0	0	3	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0009	629	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0010	629	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0011	629	1	0	1	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0012	629	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0013	629	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0014	629	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0015	629	1	0	0	0	0	1	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	a0016	629	1	0	0	1	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB8_chr20_32853923_32966845	1/0	a0001	1288	75	11	20	30	2	11	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0002	1288	58	30	2	17	1	8	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0003	1288	15	5	1	9	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0004	964	14	1	4	1	4	4	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0005	148	13	5	1	6	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0006	1288	12	0	10	0	0	2	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0007	1288	9	6	0	3	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0008	964	6	0	2	0	1	3	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0009	1288	6	6	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0010	1288	5	2	0	2	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0011	964	5	0	4	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0012	1288	4	0	3	0	1	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0013	1288	3	0	2	0	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0014	1288	3	0	0	2	1	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0015	1288	3	2	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0016	1288	3	1	2	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0017	1288	3	3	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0018	1288	3	2	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/1	a0019	1288	3	0	0	0	1	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0020	1288	2	2	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0021	1288	2	1	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0022	1288	2	0	2	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0023	1288	2	1	0	0	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0024	1288	2	0	1	0	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0025	1288	2	1	0	0	1	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0026	1288	2	1	0	0	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0027	964	2	0	0	1	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0028	1288	2	0	0	2	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0029	148	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0030	1288	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0031	1288	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0032	964	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0033	1288	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0034	1288	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0035	1288	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0036	1288	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0037	964	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0038	1288	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0039	1288	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0040	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0041	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845