JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EFCAB8_chr20_32853923_32966845	0/0	a0042	1288	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0043	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0044	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0045	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0046	1288	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0047	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0048	1288	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0049	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0050	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	a0051	1288	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB9_chr5_172189172_172208454	1/1	a0001	197	395	98	70	167	14	44	copy fasta	EFCAB9	chr5	172189172	172208454
EFCAB9_chr5_172189172_172208454	0/0	a0002	197	13	0	4	9	0	0	copy fasta	EFCAB9	chr5	172189172	172208454
EFCC1_chr3_128996304_129045742	0/0	a0001	599	135	49	25	55	1	5	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	1/0	a0002	599	84	4	23	37	4	15	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0003	599	76	17	16	23	5	15	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0004	599	16	9	0	5	0	2	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0005	599	13	8	5	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0006	599	12	0	0	11	0	1	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0007	599	5	0	0	4	0	1	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0008	599	2	0	2	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0009	599	2	0	0	2	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0010	599	2	0	0	2	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0011	599	1	0	1	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0012	339	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0013	599	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/1	a0014	599	1	0	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0015	599	1	0	0	1	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0016	599	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	a0017	599	1	0	0	0	0	1	copy fasta	EFCC1	chr3	128996304	129045742
EFEMP1_chr2_55860967_55928782	1/1	a0001	493	348	91	58	150	13	34	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	a0002	493	1	0	0	0	1	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	a0003	493	1	1	0	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP2_chr11_65861441_65877800	0/1	a0001	443	335	58	61	167	10	38	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	1/0	a0002	443	35	31	3	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	a0003	443	1	1	0	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	a0004	451	1	0	1	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	a0005	443	1	0	1	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	a0006	443	1	0	0	1	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFHB_chr3_19874472_19939217	1/0	a0001	833	100	5	23	54	5	12	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/1	a0002	833	93	31	26	20	6	9	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0003	833	34	3	10	15	3	3	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0004	833	21	0	0	16	0	5	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0005	833	15	10	1	0	1	3	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0006	833	15	15	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0007	833	15	6	6	0	0	3	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0008	833	8	8	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0009	833	6	5	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0010	833	5	2	0	2	1	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0011	833	5	2	1	1	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0012	833	4	0	2	0	0	2	copy fasta	EFHB	chr3	19874472	19939217