JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EFHB_chr3_19874472_19939217	0/0	a0013	833	3	3	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0014	833	3	2	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0015	833	3	0	2	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0016	833	2	1	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0017	833	2	0	1	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0018	833	1	0	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0019	833	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0020	833	1	0	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0021	833	1	0	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0022	833	1	0	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0023	833	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0024	833	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0025	441	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0026	833	1	0	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	a0027	833	1	1	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHC1_chr6_52415342_52502198	1/1	a0001	640	293	50	51	143	10	37	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0002	640	26	21	4	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0003	640	25	3	6	12	2	2	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0004	640	22	1	2	14	1	4	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0005	640	9	2	4	0	3	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0006	640	6	6	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0007	640	5	5	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0008	640	4	3	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0009	640	3	3	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0010	640	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0011	640	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	a0012	640	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC2_chrX_44142872_44348672	1/1	a0001	749	168	49	25	69	5	18	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0002	749	20	3	9	8	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0003	749	12	1	9	0	0	2	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0004	749	5	3	2	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0005	749	4	0	0	4	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0006	749	3	3	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0007	749	2	1	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0008	749	2	0	0	2	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0009	37	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0010	749	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0011	203	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0012	447	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	a0013	745	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHD1_chr2_232628604_232687776	1/1	a0001	239	222	78	28	83	12	19	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	a0002	239	141	12	29	79	4	17	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	a0003	239	10	4	0	2	0	4	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	a0004	239	4	0	4	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	a0005	239	2	0	1	0	0	1	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	a0006	239	1	0	0	1	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	a0007	239	1	0	0	1	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	a0008	239	1	0	0	0	0	1	copy fasta	EFHD1	chr2	232628604	232687776
EFHD2_chr1_15404888_15435339	1/1	a0001	240	422	99	86	173	16	46	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	a0002	240	1	0	0	1	0	0	copy fasta	EFHD2	chr1	15404888	15435339