JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EFHD2_chr1_15404888_15435339	0/0	a0003	240	1	1	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFL1_chr15_82125233_82267734	0/1	a0001	1120	191	28	36	102	6	18	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0002	1120	73	21	5	40	2	5	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	1/0	a0003	1120	61	3	20	23	4	10	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0004	1120	11	8	1	2	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0005	1120	7	7	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0006	1120	7	0	0	4	1	2	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0007	1120	6	6	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0008	1120	3	0	3	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0009	1120	2	2	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0010	1120	1	1	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0011	1120	1	0	0	1	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0012	1120	1	1	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0013	1120	1	0	1	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0014	1120	1	1	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0015	1120	1	0	0	0	1	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	a0016	1120	1	0	0	0	0	1	copy fasta	EFL1	chr15	82125233	82267734
EFNA1_chr1_155122876_155139899	1/1	a0001	205	245	75	41	94	10	23	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	a0002	205	101	19	25	22	8	27	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	a0003	205	2	2	0	0	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	a0004	205	1	0	0	1	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	a0005	205	1	0	0	1	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA2_chr19_1280873_1306431	1/1	a0001	213	293	86	74	88	10	33	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	a0002	213	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA3_chr1_155073837_155092538	1/1	a0001	238	301	87	57	105	14	36	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	0/0	a0002	238	31	3	8	3	4	13	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	0/0	a0003	234	2	0	1	0	0	1	copy fasta	EFNA3	chr1	155073837	155092538
EFNA4_chr1_155058740_155074553	1/1	a0001	201	333	94	67	104	18	48	copy fasta	EFNA4	chr1	155058740	155074553
EFNA4_chr1_155058740_155074553	0/0	a0002	201	1	0	1	0	0	0	copy fasta	EFNA4	chr1	155058740	155074553
EFNA5_chr5_107371894_107675937	0/0	a0001	228	190	68	48	50	10	14	copy fasta	EFNA5	chr5	107371894	107675937
EFNB1_chrX_68824021_68847160	1/1	a0001	346	325	70	59	148	13	33	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	a0002	346	7	6	1	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	a0003	317	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	a0004	319	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	a0005	130	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB2_chr13_106484745_106540662	1/1	a0001	333	356	90	72	142	10	40	copy fasta	EFNB2	chr13	106484745	106540662
EFNB3_chr17_7700202_7716372	1/1	a0001	340	425	89	83	189	18	44	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	a0002	340	4	4	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	a0003	340	4	3	1	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	a0004	61	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFR3A_chr8_131899093_132018642	1/0	a0001	821	244	36	46	128	8	25	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/1	a0002	821	144	38	31	53	8	13	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0003	821	7	7	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0004	821	3	3	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0005	821	3	0	0	3	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0006	821	2	2	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0007	821	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0008	821	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0009	821	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0010	821	1	0	1	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642