JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EFR3A_chr8_131899093_132018642	0/0	a0011	821	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0012	821	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0013	821	1	0	0	0	0	1	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0014	821	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	a0015	821	1	0	0	0	0	1	copy fasta	EFR3A	chr8	131899093	132018642
EFR3B_chr2_25037076_25164135	1/1	a0001	817	302	86	56	114	10	34	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	a0002	817	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	a0003	817	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	a0004	817	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	a0005	817	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFS_chr14_23351406_23370172	1/1	a0001	561	224	18	48	119	8	29	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0002	561	131	52	11	54	3	11	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0003	561	16	10	4	0	1	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0004	561	10	9	1	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0005	561	5	5	0	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0006	561	4	3	1	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0007	561	3	0	0	3	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0008	561	2	1	0	0	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0009	561	2	1	1	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0010	561	2	0	2	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0011	561	1	1	0	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0012	561	1	0	0	1	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0013	561	1	0	0	0	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0014	561	1	0	0	0	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	a0015	561	1	0	0	1	0	0	copy fasta	EFS	chr14	23351406	23370172
EFTUD2_chr17_44844948_44904445	1/1	a0001	972	369	91	72	150	16	38	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	a0002	972	1	1	0	0	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EGFL6_chrX_13564601_13638575	1/1	a0001	553	236	42	43	107	11	31	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0002	553	45	17	3	24	0	1	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0003	553	5	0	3	2	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0004	553	4	4	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0005	553	3	3	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0006	553	2	2	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0007	553	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0008	336	1	0	0	1	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0009	553	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0010	553	1	0	1	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0011	553	1	0	0	1	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0012	553	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	a0013	553	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL7_chr9_136657916_136677678	1/1	a0001	273	353	79	61	160	11	40	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0002	273	67	18	16	25	3	5	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0003	273	2	0	0	0	2	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0004	273	2	0	0	1	0	1	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0005	273	2	2	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0006	273	1	0	0	1	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0007	273	1	0	0	1	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0008	273	1	0	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0009	273	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	a0010	273	1	0	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678