JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EGF_chr4_109907883_110018766	0/0	a0011	1207	3	3	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0012	1207	3	3	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0013	1152	2	0	0	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0014	1207	2	2	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0015	1207	2	2	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0016	1207	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0017	1207	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0018	1207	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0019	1207	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0020	1207	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0021	676	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0022	1207	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0023	1207	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0024	1207	1	0	1	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0025	1223	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/1	a0026	1207	1	0	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0027	1207	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766
EGLN1_chr1_231358756_231427287	1/1	a0001	426	204	51	34	83	11	23	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	a0002	426	119	26	11	68	1	13	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	a0003	426	5	0	0	5	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	a0004	426	4	3	1	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	a0005	419	3	0	0	3	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	a0006	426	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	a0007	426	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	a0008	426	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN2_chr19_40794191_40813434	1/1	a0001	407	415	97	68	185	16	47	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	a0002	407	2	0	0	0	1	1	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	a0003	34	1	0	0	0	1	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	a0004	407	1	0	0	1	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	a0005	407	1	1	0	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN3_chr14_33919227_33956074	1/1	a0001	239	420	95	70	197	16	40	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	a0002	239	3	3	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	a0003	239	1	0	0	1	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGR1_chr5_138460479_138474303	1/1	a0001	543	356	80	80	135	16	43	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	a0002	543	1	0	0	0	0	1	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	a0003	543	1	0	0	1	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	a0004	543	1	1	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	a0005	543	1	1	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR2_chr10_62806996_62821366	1/1	a0001	476	424	87	72	205	14	44	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	a0002	476	1	1	0	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	a0003	476	1	0	0	1	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR3_chr8_22682659_22698480	1/1	a0001	387	373	90	79	144	18	40	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	a0002	387	1	0	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR4_chr2_73285929_73298548	1/1	a0001	486	356	91	68	139	14	42	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	a0002	486	1	0	0	1	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	a0003	486	1	1	0	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EHBP1L1_chr11_65571053_65597650	0/1	a0001	1523	177	27	33	92	8	16	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0002	1523	163	27	32	71	7	26	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0003	1523	16	15	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0004	1523	15	12	0	3	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650