JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EHBP1L1_chr11_65571053_65597650	0/0	a0005	1523	6	6	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0006	1523	3	0	0	3	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0007	1523	3	0	0	3	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0008	1523	2	1	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0009	1523	2	2	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0010	1523	2	2	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0011	1523	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0012	1523	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0013	1523	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0014	1523	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0015	598	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0016	1523	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0017	1523	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0018	1523	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0019	1523	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0020	432	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0021	1523	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0022	1523	1	0	0	0	1	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0023	1523	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0024	1122	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0025	1523	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0026	1523	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0027	1523	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0028	1523	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0029	1523	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0030	1523	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0031	1523	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	a0032	1523	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	1/0	a0033	1523	1	0	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1_chr2_62700713_63051487	1/1	a0001	1160	182	49	34	65	10	22	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	a0002	1160	13	1	3	5	0	4	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	a0003	1160	2	0	2	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	a0004	1160	1	0	1	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHD1_chr11_64846642_64883621	1/1	a0001	534	352	96	54	151	10	39	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	a0002	534	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	a0003	534	1	0	0	0	0	1	copy fasta	EHD1	chr11	64846642	64883621
EHD2_chr19_47708422_47748134	1/1	a0001	543	376	90	75	152	18	39	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	a0002	543	12	8	0	0	0	4	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	a0003	543	7	0	1	6	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	a0004	543	1	0	0	1	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	a0005	543	1	0	0	1	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	a0006	543	1	0	0	0	0	1	copy fasta	EHD2	chr19	47708422	47748134
EHD3_chr2_31229152_31274451	1/1	a0001	535	375	95	62	160	16	40	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	a0002	535	1	0	0	1	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	a0003	535	1	1	0	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	a0004	535	1	0	0	1	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD4_chr15_41890933_41977557	1/1	a0001	541	340	97	56	136	11	38	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	a0002	541	17	1	6	1	3	6	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	a0003	541	2	0	0	2	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	a0004	541	1	0	0	1	0	0	copy fasta	EHD4	chr15	41890933	41977557