Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADNP2_chr18_80104262_80145346	0/0	a0008	1131	1	0	1	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP_chr20_50883918_50936437	1/1	a0001	1102	348	83	70	151	8	34	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0002	1102	2	2	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0003	1102	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0004	1102	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0005	1102	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0006	1102	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0007	1102	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0008	1102	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0009	1102	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	a0010	1102	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADORA1_chr1_203122726_203172405	1/1	a0001	326	407	96	75	178	14	42	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	a0002	326	1	0	1	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA2A_chr22_24422599_24447357	1/1	a0001	412	377	89	64	169	18	35	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	a0002	412	4	4	0	0	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	a0003	412	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	a0004	412	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	a0005	412	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	a0006	412	1	1	0	0	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	a0007	412	1	0	0	0	0	1	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2B_chr17_15940130_15980746	1/1	a0001	332	325	89	60	125	14	35	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	a0002	331	17	5	4	4	0	4	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	a0003	332	2	2	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	a0004	297	1	0	0	1	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	a0005	332	1	0	0	0	0	1	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA3_chr1_111494429_111508633	1/0	a0001	318	430	91	70	209	13	46	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	a0002	318	13	2	3	6	0	2	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/1	a0003	318	10	3	5	0	1	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	a0004	318	2	2	0	0	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	a0005	318	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	a0006	318	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	a0007	318	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADO_chr10_62799720_62813479	1/0	a0001	270	339	88	47	168	7	28	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/1	a0002	270	75	4	16	38	4	12	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	a0003	270	12	2	5	0	1	4	copy fasta	ADO	chr10	62799720	62813479
ADPGK_chr15_72746294_72788758	1/1	a0001	497	251	52	37	126	10	24	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	a0002	497	94	31	17	43	2	1	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	a0003	497	21	7	8	0	2	4	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	a0004	497	1	0	0	1	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	a0005	497	1	1	0	0	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	a0006	497	1	1	0	0	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	a0007	497	1	0	0	0	0	1	copy fasta	ADPGK	chr15	72746294	72788758
ADPRHL1_chr13_113394611_113458488	1/1	a0001	1967	102	10	24	47	0	19	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	a0002	2044	52	17	15	8	4	8	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	a0003	2044	19	9	6	0	2	2	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	a0004	2044	16	15	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	a0005	1955	8	0	0	7	0	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	a0006	2044	5	5	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	a0007	2044	4	0	3	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	a0008	1944	3	3	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488