JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EHF_chr11_34616093_34668288	1/1	a0001	300	399	92	74	177	12	42	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	a0002	300	10	0	2	6	0	2	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	a0003	300	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHHADH_chr3_185185624_185259049	1/1	a0001	723	223	33	37	116	10	25	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0002	723	61	25	12	19	1	4	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0003	723	30	2	3	24	1	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0004	723	7	7	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0005	723	7	7	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0006	723	4	2	2	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0007	723	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0008	723	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0009	723	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0010	723	2	0	2	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0011	723	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0012	723	1	0	0	1	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0013	723	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0014	723	1	0	0	0	0	1	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0015	723	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0016	723	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	a0017	723	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHMT1_chr9_137614005_137841127	1/1	a0001	1298	159	57	42	27	8	23	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	a0002	1298	3	3	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	a0003	1298	2	2	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	a0004	1298	1	0	1	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	a0005	1298	1	0	0	0	0	1	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	a0006	1298	1	0	1	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	a0007	1298	1	0	0	1	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	a0008	1298	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	a0009	1298	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT2_chr6_31874759_31902698	0/0	a0001	1210	245	88	49	70	11	27	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/1	a0002	1210	155	2	33	99	7	13	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0003	1210	2	0	0	1	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0004	1210	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0005	1210	1	0	1	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0006	1210	1	0	1	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0007	1210	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0008	1210	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0009	1210	1	0	0	0	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0010	1210	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0011	1210	1	0	0	0	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0012	1210	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0013	1210	1	0	0	0	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	a0014	1210	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EI24_chr11_125564477_125589684	1/1	a0001	340	360	82	66	163	14	33	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	a0002	340	1	0	0	0	0	1	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	a0003	340	1	0	0	1	0	0	copy fasta	EI24	chr11	125564477	125589684
EID1_chr15_48873134_48885173	1/1	a0001	187	434	90	76	200	18	48	copy fasta	EID1	chr15	48873134	48885173
EID2B_chr19_39525987_39537852	1/1	a0001	161	418	88	72	200	16	40	copy fasta	EID2B	chr19	39525987	39537852
EID2_chr19_39533707_39545161	1/1	a0001	236	222	62	35	98	5	20	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	a0002	236	95	11	14	55	6	9	copy fasta	EID2	chr19	39533707	39545161