JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EID2_chr19_39533707_39545161	0/0	a0003	236	91	0	20	55	5	11	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	a0004	236	6	5	1	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	a0005	236	3	3	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	a0006	227	1	1	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	a0007	236	1	1	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	a0008	236	1	1	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID3_chr12_104298739_104310205	1/1	a0001	333	409	91	66	184	18	48	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	a0002	333	4	4	0	0	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	a0003	333	4	3	0	0	0	1	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	a0004	333	1	0	0	0	0	1	copy fasta	EID3	chr12	104298739	104310205
EIF1AD_chr11_65991545_66007157	1/1	a0001	165	354	83	57	156	12	44	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	a0002	165	36	9	1	26	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	a0003	165	2	2	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	a0004	165	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	a0005	165	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AX_chrX_20119525_20146838	1/1	a0001	144	278	72	58	111	9	26	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AY_chrY_20570776_20598154	1/1	a0001	144	132	18	20	71	5	16	copy fasta	EIF1AY	chrY	20570776	20598154
EIF1AY_chrY_20570776_20598154	0/0	a0002	64	1	0	0	1	0	0	copy fasta	EIF1AY	chrY	20570776	20598154
EIF1B_chr3_40304707_40317424	1/1	a0001	113	407	100	58	187	14	46	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	a0002	113	1	0	0	1	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1_chr17_41683885_41697668	1/1	a0001	113	330	96	68	108	14	42	copy fasta	EIF1	chr17	41683885	41697668
EIF2AK1_chr7_6017247_6064175	1/1	a0001	630	326	85	67	123	15	34	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0002	630	74	3	5	57	0	9	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0003	630	3	3	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0004	630	3	3	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0005	630	2	0	2	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0006	630	1	0	1	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0007	630	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0008	630	1	0	0	0	0	1	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0009	630	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0010	630	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0011	630	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0012	630	1	1	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0013	630	1	1	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0014	630	1	0	0	0	1	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	a0015	630	1	0	1	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK2_chr2_37094210_37161980	1/1	a0001	551	325	88	62	117	18	38	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	a0002	551	1	0	0	1	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK3_chr2_88551741_88632464	0/0	a0001	1115	142	55	25	47	4	11	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/1	a0002	1115	95	2	24	53	5	10	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	a0003	1116	82	12	8	43	6	13	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	a0004	1115	35	10	6	7	1	11	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	a0005	1115	3	3	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	a0006	1115	2	0	0	2	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	a0007	1115	2	0	0	2	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	a0008	1116	2	0	0	1	0	1	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	a0009	1115	1	0	1	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	1/0	a0010	1116	1	0	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	a0011	1116	1	0	0	1	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK4_chr15_39929115_40040591	0/0	a0001	1649	126	18	10	90	3	5	copy fasta	EIF2AK4	chr15	39929115	40040591