JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EIF2AK4_chr15_39929115_40040591	0/1	a0002	1649	120	50	22	29	6	12	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	1/0	a0003	1649	61	7	11	41	0	1	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0004	1651	27	3	5	12	0	7	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0005	1649	10	1	4	1	1	3	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0006	732	5	1	0	2	0	2	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0007	1649	4	0	0	4	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0008	1649	3	3	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0009	1649	2	1	1	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0010	1649	2	1	1	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0011	732	2	2	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0012	1649	1	0	0	0	0	1	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0013	732	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0014	1649	1	0	0	0	0	1	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0015	1649	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0016	1649	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	a0017	1649	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2A_chr3_150541787_150591016	1/0	a0001	585	253	85	51	89	6	21	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/1	a0002	585	138	6	25	81	6	19	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	a0003	585	1	0	0	1	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	a0004	585	1	0	0	1	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	a0005	585	1	1	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2B1_chr12_123615406_123638686	1/1	a0001	305	321	93	62	110	18	36	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	a0002	305	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B2_chr14_74997921_75017366	1/1	a0001	351	325	80	60	134	12	37	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	a0002	351	1	0	0	0	0	1	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B3_chr1_44845522_44991595	1/1	a0001	452	317	77	54	132	15	37	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	a0002	452	1	0	0	1	0	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	a0003	452	1	1	0	0	0	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	a0004	452	1	0	0	0	1	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	a0005	452	1	0	0	1	0	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	a0006	452	1	0	0	0	0	1	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B4_chr2_27359352_27375338	1/1	a0001	523	372	77	71	163	14	45	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	a0002	523	2	0	2	0	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	a0003	523	1	0	0	1	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	a0004	523	1	0	0	0	0	1	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	a0005	523	1	1	0	0	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	a0006	523	1	0	1	0	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B5_chr3_184130358_184150311	1/1	a0001	721	253	69	53	94	9	26	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	a0002	721	168	25	27	97	3	16	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	a0003	721	2	0	0	0	0	2	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	a0004	721	1	0	0	1	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	a0005	721	1	0	0	1	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	a0006	721	1	0	0	1	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2D_chr1_206586642_206617465	1/1	a0001	584	402	75	67	210	12	36	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	a0002	584	23	20	1	0	0	2	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	a0003	584	1	1	0	0	0	0	copy fasta	EIF2D	chr1	206586642	206617465
EIF2S1_chr14_67355328_67391516	1/1	a0001	315	365	90	78	160	6	29	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	a0002	315	2	2	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	a0003	303	1	0	0	0	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S2_chr20_34083309_34117243	1/1	a0001	333	358	82	68	146	18	42	copy fasta	EIF2S2	chr20	34083309	34117243