JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EIF2S2_chr20_34083309_34117243	0/0	a0002	333	2	2	0	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	a0003	333	1	0	0	0	0	1	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	a0004	333	1	0	0	0	0	1	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S3B_chr12_10500890_10513525	0/1	a0001	472	300	58	53	145	12	31	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0002	472	71	3	11	39	6	12	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0003	472	21	18	3	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0004	472	11	8	3	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0005	472	7	0	0	7	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	1/0	a0006	472	4	3	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0007	472	3	0	0	0	0	3	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0008	472	2	2	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0009	472	1	0	0	1	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0010	472	1	1	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	a0011	472	1	1	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3_chrX_24049956_24083810	1/1	a0001	472	272	68	52	121	8	21	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	a0002	472	19	2	5	0	3	9	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	a0003	42	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	a0004	125	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	a0005	386	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF3A_chr10_119028670_119085817	1/1	a0001	1382	316	75	56	137	16	30	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0002	1382	15	0	0	13	0	2	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0003	1382	6	6	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0004	1372	4	3	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0005	1382	2	0	0	2	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0006	1382	2	0	2	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0007	1382	2	2	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0008	1382	1	1	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0009	1382	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	a0010	1382	1	1	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3B_chr7_2349827_2385745	0/1	a0001	814	232	44	49	102	8	28	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	1/0	a0002	814	117	40	24	35	6	11	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0003	814	16	1	7	8	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0004	814	5	5	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0005	814	3	0	0	0	0	3	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0006	814	2	2	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0007	814	1	0	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0008	814	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0009	814	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0010	814	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0011	814	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0012	814	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0013	814	1	0	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0014	814	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	a0015	814	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3CL_chr16_28374715_28408841	0/0	a0001	913	139	38	21	55	6	19	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	a0002	581	18	2	2	13	0	1	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	a0003	581	6	5	1	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	a0004	914	5	4	0	1	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	a0005	581	1	1	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	a0006	145	1	1	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841