JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EIF3CL_chr16_28374715_28408841	0/0	a0007	581	1	0	0	1	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	a0008	913	1	1	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3C_chr16_28706464_28740596	0/0	a0001	913	98	17	2	57	0	22	copy fasta	EIF3C	chr16	28706464	28740596
EIF3C_chr16_28706464_28740596	0/0	a0002	457	1	0	0	1	0	0	copy fasta	EIF3C	chr16	28706464	28740596
EIF3C_chr16_28706464_28740596	0/0	a0003	581	1	1	0	0	0	0	copy fasta	EIF3C	chr16	28706464	28740596
EIF3D_chr22_36505855_36534166	1/1	a0001	548	397	92	72	177	12	42	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	a0002	548	1	0	0	1	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	a0003	548	1	0	0	1	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	a0004	548	1	0	0	1	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3E_chr8_108196216_108253717	1/1	a0001	445	347	84	58	148	14	41	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	a0002	445	1	0	0	0	0	1	copy fasta	EIF3E	chr8	108196216	108253717
EIF3F_chr11_7982337_8006852	1/1	a0001	357	358	78	65	159	15	39	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	a0002	357	12	7	2	0	1	2	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	a0003	357	11	0	8	1	1	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	a0004	357	6	5	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	a0005	357	2	0	0	2	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	a0006	357	2	2	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	a0007	357	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	a0008	357	1	0	0	0	1	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	a0009	357	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3G_chr19_10110014_10124899	1/1	a0001	320	457	97	86	204	18	50	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	a0002	320	1	1	0	0	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3H_chr8_116637130_116760823	1/1	a0001	352	335	94	60	147	8	24	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	a0002	352	1	0	0	1	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3I_chr1_32217407_32236604	1/1	a0001	325	383	89	70	174	14	34	copy fasta	EIF3I	chr1	32217407	32236604
EIF3I_chr1_32217407_32236604	0/0	a0002	325	1	1	0	0	0	0	copy fasta	EIF3I	chr1	32217407	32236604
EIF3J_chr15_44532147_44567803	1/1	a0001	258	248	54	49	110	8	25	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	a0002	258	41	26	1	12	0	2	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	a0003	258	3	0	0	2	0	1	copy fasta	EIF3J	chr15	44532147	44567803
EIF3K_chr19_38614188_38641954	1/1	a0001	218	397	83	68	186	14	44	copy fasta	EIF3K	chr19	38614188	38641954
EIF3K_chr19_38614188_38641954	0/0	a0002	218	2	2	0	0	0	0	copy fasta	EIF3K	chr19	38614188	38641954
EIF3K_chr19_38614188_38641954	0/0	a0003	218	1	1	0	0	0	0	copy fasta	EIF3K	chr19	38614188	38641954
EIF3L_chr22_37844419_37894407	1/1	a0001	564	317	84	62	117	14	38	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	a0002	564	1	0	0	1	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3M_chr11_32578831_32611264	1/1	a0001	374	343	92	74	117	12	46	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	a0002	374	1	0	0	1	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF4A1_chr17_7567825_7584006	1/1	a0001	406	435	96	82	197	18	40	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	a0002	406	1	0	0	1	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A2_chr3_186778577_186794897	1/1	a0001	407	456	96	74	218	18	48	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A3_chr17_80129369_80152128	1/1	a0001	411	419	98	75	186	16	42	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	a0002	411	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4B_chr12_53001456_53047215	1/1	a0001	611	365	95	65	153	10	40	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	a0002	611	5	0	5	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	a0003	611	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	a0004	601	1	0	0	1	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4E1B_chr5_176625675_176651644	1/1	a0001	242	408	87	76	187	16	40	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	a0002	242	7	7	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	a0003	242	4	0	0	4	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	a0004	242	1	1	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	a0005	242	1	1	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644