JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EIF4E1B_chr5_176625675_176651644	0/0	a0006	242	1	0	0	1	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E2_chr2_232545689_232574210	1/1	a0001	245	422	94	72	196	16	42	copy fasta	EIF4E2	chr2	232545689	232574210
EIF4E3_chr3_71670414_71730402	1/1	a0001	224	397	94	78	169	12	42	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	a0002	224	1	0	0	1	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4EBP1_chr8_38025534_38065365	1/1	a0001	118	343	88	57	146	10	40	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	a0002	118	1	0	1	0	0	0	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP2_chr10_70399145_70433618	1/1	a0001	120	422	90	80	194	12	44	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP3_chr5_140542662_140554576	1/1	a0001	100	392	93	72	173	18	34	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4EBP3_chr5_140542662_140554576	0/0	a0002	95	1	1	0	0	0	0	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4EBP3_chr5_140542662_140554576	0/0	a0003	100	1	0	0	1	0	0	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4ENIF1_chr22_31434367_31494842	1/1	a0001	985	361	78	70	160	14	37	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	a0002	985	1	0	0	1	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	a0003	985	1	1	0	0	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	a0004	985	1	1	0	0	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	a0005	985	1	0	0	1	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	a0006	985	1	0	0	0	0	1	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4E_chr4_98874276_98934133	1/1	a0001	217	300	92	56	116	4	30	copy fasta	EIF4E	chr4	98874276	98934133
EIF4G1_chr3_184309606_184340353	0/1	a0001	1599	279	81	41	114	15	27	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0002	1599	85	2	10	58	3	12	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0003	1596	5	0	5	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0004	1599	4	3	1	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0005	1599	3	1	2	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0006	1599	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0007	1599	1	0	0	0	0	1	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0008	1599	1	0	1	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0009	1599	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0010	1599	1	1	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0011	1599	1	1	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	a0012	1599	1	1	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	1/0	a0013	1599	1	0	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G2_chr11_10792054_10813926	1/1	a0001	7	412	86	68	194	14	48	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G3_chr1_20801479_21181897	1/1	a0001	1641	301	83	52	111	16	37	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	a0002	1641	3	2	1	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	a0003	1641	2	1	1	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	a0004	1641	2	2	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	a0005	1641	1	0	0	0	0	1	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	a0006	1641	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	a0007	1641	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	a0008	1641	1	0	0	1	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4H_chr7_74169356_74202096	1/1	a0001	248	373	90	64	167	10	40	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	a0002	248	1	0	0	1	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF5A2_chr3_170883418_170913637	1/1	a0001	153	394	86	78	172	14	42	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5AL1_chr10_79507533_79521440	1/1	a0001	154	337	74	73	136	16	36	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	a0002	154	73	9	4	56	2	2	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	a0003	154	17	13	1	1	0	2	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	a0004	154	2	0	1	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	a0005	154	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5A_chr17_7302628_7317463	1/1	a0001	154	423	94	79	190	16	42	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	a0002	154	1	0	1	0	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5B_chr2_99332389_99406326	0/0	a0001	1220	229	64	58	75	9	23	copy fasta	EIF5B	chr2	99332389	99406326