JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EIF5B_chr2_99332389_99406326	1/1	a0002	1220	110	17	16	63	1	11	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	a0003	1220	1	0	0	1	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	a0004	1220	1	0	0	1	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	a0005	1220	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5_chr14_103329237_103350025	1/1	a0001	431	435	94	76	200	16	47	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	a0002	431	1	0	0	1	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	a0003	431	1	0	0	0	0	1	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	a0004	431	1	0	0	1	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF6_chr20_35273918_35289772	1/1	a0001	245	385	94	71	158	18	42	copy fasta	EIF6	chr20	35273918	35289772
EIF6_chr20_35273918_35289772	0/0	a0002	245	1	0	1	0	0	0	copy fasta	EIF6	chr20	35273918	35289772
EIPR1_chr2_3183970_3382818	1/1	a0001	387	250	84	50	68	14	32	copy fasta	EIPR1	chr2	3183970	3382818
ELAC1_chr18_50963040_50993121	1/1	a0001	363	379	93	69	170	12	33	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	a0002	363	3	3	0	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	a0003	363	1	0	1	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	a0004	363	1	0	0	0	0	1	copy fasta	ELAC1	chr18	50963040	50993121
ELAC2_chr17_12986612_13023027	1/1	a0001	826	319	61	52	158	13	33	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0002	826	66	30	18	4	3	11	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0003	826	6	1	1	0	2	2	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0004	826	2	2	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0005	826	2	2	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0006	826	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0007	826	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0008	826	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0009	826	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	a0010	826	1	0	1	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELANE_chr19_847303_861243	0/1	a0001	267	393	88	68	183	13	40	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	a0002	267	4	0	2	0	1	1	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	a0003	267	2	2	0	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	a0004	267	1	0	0	1	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	a0005	267	1	0	1	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	a0006	267	1	0	0	0	0	1	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	a0007	78	1	0	1	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELAPOR1_chr1_109109115_109211781	0/1	a0001	1013	129	25	28	51	6	18	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	a0002	1013	56	40	11	0	4	1	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	a0003	1013	26	15	6	1	4	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	a0004	1013	9	0	3	6	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	1/0	a0005	1013	6	5	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	a0006	1013	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	a0007	1013	1	0	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	a0008	1013	1	0	0	0	0	1	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	a0009	1013	1	0	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR2_chr7_86871906_87064654	1/1	a0001	1029	165	54	31	64	8	6	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	a0002	1029	14	13	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	a0003	1029	7	5	1	1	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	a0004	1029	6	5	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	a0005	1029	1	1	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	a0006	1029	1	0	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	a0007	1029	1	0	0	1	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	a0008	1029	1	0	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAVL1_chr19_7953573_8010641	1/1	a0001	326	276	82	58	88	16	30	copy fasta	ELAVL1	chr19	7953573	8010641