JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ELAVL2_chr9_23685104_23831240	1/1	a0001	359	347	72	63	156	12	42	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	a0002	359	2	0	0	0	0	2	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	a0003	359	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	a0004	359	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	a0005	359	1	0	1	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL3_chr19_11446326_11486046	1/1	a0001	367	318	92	68	102	14	40	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL4_chr1_50103920_50208772	1/1	a0001	366	276	90	46	102	12	24	copy fasta	ELAVL4	chr1	50103920	50208772
ELF1_chr13_40926924_41024316	1/1	a0001	619	233	51	18	141	6	15	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0002	619	95	5	33	38	6	13	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0003	619	15	5	0	7	0	3	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0004	619	8	6	2	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0005	619	3	0	0	3	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0006	619	2	2	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0007	619	1	0	0	1	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0008	619	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0009	619	1	0	0	0	0	1	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0010	619	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0011	619	1	0	1	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	a0012	619	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF2_chr4_139052265_139182218	1/1	a0001	593	322	75	57	143	12	33	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	a0002	593	18	9	0	9	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	a0003	593	2	0	1	0	0	1	copy fasta	ELF2	chr4	139052265	139182218
ELF3_chr1_202005587_202022183	1/1	a0001	371	434	83	82	207	15	45	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	a0002	371	15	11	0	0	3	1	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	a0003	371	2	0	0	2	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	a0004	371	2	2	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	a0005	371	2	2	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	a0006	371	1	1	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	a0007	371	1	1	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	a0008	371	1	0	0	1	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF4_chrX_130058955_130115497	1/1	a0001	663	268	71	49	112	8	26	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	a0002	61	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	a0003	663	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	a0004	663	1	0	0	0	0	1	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	a0005	424	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	a0006	663	1	0	0	0	0	1	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	a0007	138	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF5_chr11_34473791_34518794	1/1	a0001	255	425	94	76	203	16	34	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	a0002	255	10	0	0	10	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	a0003	255	1	0	0	1	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELFN1_chr7_1665277_1752946	1/1	a0001	828	277	79	55	92	13	36	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0002	828	7	7	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0003	828	3	3	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0004	828	2	0	0	0	0	2	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0005	828	2	0	0	2	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0006	828	2	2	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0007	828	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0008	828	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0009	828	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0010	828	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946