JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ELFN1_chr7_1665277_1752946	0/0	a0011	828	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0012	828	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0013	828	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0014	828	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	a0015	828	1	0	0	0	1	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN2_chr22_37362960_37432479	1/1	a0001	820	326	92	56	123	15	38	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	a0002	820	4	4	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	a0003	820	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	a0004	820	1	0	0	0	1	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	a0005	820	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	a0006	820	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELK1_chrX_47630521_47655563	1/1	a0001	428	222	41	44	97	11	27	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	a0002	428	45	30	1	13	0	1	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	a0003	428	4	3	1	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	a0004	428	2	2	0	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	a0005	64	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	a0006	428	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	a0007	428	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK3_chr12_96189375_96274824	1/1	a0001	407	319	79	73	115	14	36	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	a0002	407	31	11	1	13	2	4	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	a0003	407	2	0	0	2	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	a0004	407	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	a0005	407	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK4_chr1_205602943_205637011	1/1	a0001	431	422	90	76	194	14	46	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	a0002	431	2	2	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELL2_chr5_95880098_95966851	1/1	a0001	640	195	45	39	87	3	19	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	a0002	640	111	29	17	50	4	11	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	a0003	640	3	1	1	0	1	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	a0004	640	2	0	0	2	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	a0005	640	1	1	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	a0006	640	1	0	1	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	a0007	640	1	0	0	1	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL3_chr15_43767620_43781966	1/1	a0001	397	265	57	44	119	11	32	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	a0002	397	100	26	12	55	1	6	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	a0003	397	5	5	0	0	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	a0004	397	1	0	0	1	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	a0005	397	1	0	0	1	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL_chr19_18437663_18527070	1/1	a0001	621	195	68	60	38	8	19	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	a0002	621	43	22	6	5	2	8	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	a0003	621	2	0	1	0	0	1	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	a0004	621	1	0	0	1	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	a0005	621	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	a0006	621	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	a0007	621	1	0	1	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELMO1_chr7_36847906_37453864	1/1	a0001	727	91	48	25	10	0	6	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	a0002	727	1	0	1	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO2_chr20_46361050_46411615	1/1	a0001	720	309	85	48	132	10	32	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	a0002	720	2	0	0	2	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	a0003	720	1	1	0	0	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO3_chr16_67194131_67209004	0/0	a0001	720	114	43	21	34	5	11	copy fasta	ELMO3	chr16	67194131	67209004