JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ELMO3_chr16_67194131_67209004	1/1	a0002	720	112	3	25	61	5	16	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0003	720	53	40	3	6	0	4	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0004	720	16	0	0	16	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0005	720	11	3	1	0	1	6	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0006	720	7	1	6	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0007	720	2	0	1	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0008	720	2	0	0	2	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0009	720	2	1	1	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0010	720	2	2	0	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0011	720	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0012	720	1	0	0	0	1	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0013	720	1	0	0	0	0	1	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0014	720	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0015	720	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0016	720	1	1	0	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	a0017	720	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMOD1_chr11_107586147_107671779	1/1	a0001	334	338	93	60	140	12	31	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	a0002	334	2	0	0	2	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	a0003	334	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	a0004	334	1	0	0	0	0	1	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD2_chr4_140519168_140558770	1/1	a0001	293	364	86	62	172	6	36	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	a0002	293	5	0	0	5	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	a0003	293	1	0	0	1	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD3_chr2_85349769_85396748	1/1	a0001	381	305	62	64	126	13	38	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0002	381	22	0	3	19	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0003	381	21	15	5	0	1	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0004	381	17	5	5	4	1	2	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0005	381	13	4	1	2	3	3	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0006	381	2	0	0	2	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0007	381	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0008	381	1	0	0	1	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0009	381	1	0	0	0	0	1	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0010	381	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0011	381	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	a0012	381	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELN_chr7_74023173_74074907	0/0	a0001	724	280	63	44	139	5	29	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0002	724	56	9	15	17	8	7	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0003	724	7	0	0	7	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0004	724	6	1	2	0	1	2	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0005	724	2	1	1	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0006	724	2	2	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0007	724	2	0	2	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0008	724	2	0	0	2	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0009	724	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0010	724	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0011	724	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0012	724	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0013	724	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0014	724	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0015	719	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907