Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCA13_chr7_48166458_48652497	0/0	a0052	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0053	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0054	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0055	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0056	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0057	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0058	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	1/0	a0059	5058	1	0	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0060	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0061	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0062	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0063	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0064	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0065	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0066	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0067	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0068	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0069	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0070	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0071	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0072	5058	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0073	5058	1	0	0	0	0	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0074	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0075	5058	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0076	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0077	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0078	5058	1	0	0	0	0	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0079	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0080	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0081	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0082	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0083	5058	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0084	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0085	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0086	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0087	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0088	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA1_chr9_104776006_104933155	0/1	a0001	2261	59	2	20	21	5	10	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0002	2261	39	31	1	7	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0003	2261	31	3	5	19	1	3	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	1/0	a0004	2261	28	15	5	2	1	4	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0005	2261	25	12	3	4	0	6	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0006	2261	20	0	4	16	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0007	2261	18	0	2	13	0	3	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0008	2261	14	5	2	5	0	2	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0009	2261	13	2	3	5	1	2	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0010	2261	11	0	8	2	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0011	2261	8	8	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0012	2261	8	4	2	2	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0013	2261	6	0	0	6	0	0	copy fasta	ABCA1	chr9	104776006	104933155