JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ELN_chr7_74023173_74074907	0/0	a0016	728	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	a0017	724	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELOA2_chr18_47027527_47040621	0/0	a0001	753	248	38	49	128	5	28	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	1/1	a0002	753	144	35	29	57	9	12	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0003	753	7	0	1	4	1	1	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0004	753	7	0	0	7	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0005	753	6	2	2	0	2	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0006	753	6	6	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0007	617	6	0	0	6	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0008	753	6	6	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0009	753	5	0	2	0	1	2	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0010	753	3	3	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0011	753	2	2	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0012	753	1	1	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0013	753	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0014	753	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0015	753	1	0	0	0	0	1	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0016	753	1	1	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0017	753	1	0	1	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0018	753	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	a0019	753	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA_chr1_23738471_23767059	1/1	a0001	772	347	74	69	150	16	36	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	a0002	772	26	1	7	12	2	4	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	a0003	772	16	12	4	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	a0004	772	5	3	2	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	a0005	772	3	3	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	a0006	772	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	a0007	772	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	a0008	772	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOB_chr16_2766414_2782280	1/1	a0001	118	438	98	82	194	16	46	copy fasta	ELOB	chr16	2766414	2782280
ELOC_chr8_73940119_73977191	1/1	a0001	112	404	90	68	182	12	50	copy fasta	ELOC	chr8	73940119	73977191
ELOF1_chr19_11548046_11564230	1/1	a0001	83	412	92	78	176	18	46	copy fasta	ELOF1	chr19	11548046	11564230
ELOVL1_chr1_43358401_43373011	1/1	a0001	279	383	95	76	160	14	36	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL1_chr1_43358401_43373011	0/0	a0002	279	1	1	0	0	0	0	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL2_chr6_10975759_11049305	1/1	a0001	296	375	91	66	168	12	36	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	a0002	296	2	2	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	a0003	296	1	0	0	1	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	a0004	296	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	a0005	296	1	0	0	1	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL3_chr10_102221299_102234589	1/1	a0001	270	434	98	78	204	12	40	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL3_chr10_102221299_102234589	0/0	a0002	270	2	0	2	0	0	0	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL4_chr6_79909814_79952553	1/1	a0001	314	258	78	55	90	10	23	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	a0002	314	95	18	13	42	2	20	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	a0003	314	1	0	0	0	0	1	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL5_chr6_53262404_53353950	1/1	a0001	299	319	76	74	126	15	26	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	a0002	299	1	0	0	0	1	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL6_chr4_110040846_110203615	1/1	a0001	265	338	90	66	136	16	28	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL7_chr5_60746791_60849269	1/1	a0001	281	255	80	46	79	16	32	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	a0002	281	2	0	0	2	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	a0003	281	1	0	0	1	0	0	copy fasta	ELOVL7	chr5	60746791	60849269