JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ELP4_chr11_31504767_31795324	1/1	a0001	424	261	69	54	99	6	31	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	a0002	424	5	5	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	a0003	424	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	a0004	424	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	a0005	424	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	a0006	424	1	0	0	0	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP5_chr17_7247215_7264937	1/1	a0001	300	400	82	74	182	18	42	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	a0002	300	5	5	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	a0003	300	3	0	0	3	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	a0004	300	1	1	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	a0005	300	1	1	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	a0006	300	1	1	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	a0007	300	1	0	0	1	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP6_chr3_47490640_47518712	1/1	a0001	266	372	90	70	162	14	34	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	0/0	a0002	266	1	0	1	0	0	0	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	0/0	a0003	266	1	0	1	0	0	0	copy fasta	ELP6	chr3	47490640	47518712
ELSPBP1_chr19_47989632_48030154	0/1	a0001	223	210	35	46	100	7	21	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	1/0	a0002	223	49	16	12	14	1	5	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0003	223	43	5	9	18	4	7	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0004	223	31	9	5	15	1	1	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0005	223	12	12	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0006	223	12	6	3	1	0	2	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0007	223	7	2	2	0	3	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0008	223	4	0	0	0	0	4	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0009	223	3	3	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0010	223	3	3	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0011	223	3	1	2	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0012	223	2	0	0	2	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0013	223	2	0	0	2	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0014	223	2	1	1	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0015	223	2	2	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0016	223	1	0	0	1	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0017	223	1	0	0	1	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	a0018	223	1	1	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
EMB_chr5_50391192_50446288	1/1	a0001	327	340	88	58	140	14	38	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	a0002	327	2	0	0	2	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	a0003	277	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	a0004	327	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	a0005	327	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	a0006	327	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMC10_chr19_50471507_50495871	1/1	a0001	262	346	89	73	123	14	45	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	a0002	262	2	1	0	1	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	a0003	262	1	0	0	1	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	a0004	262	1	0	0	0	0	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	a0005	262	1	0	1	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	a0006	262	1	0	0	1	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC1_chr1_19210660_19256524	0/0	a0001	993	144	37	26	65	5	11	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	1/0	a0002	993	118	15	34	43	9	16	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/1	a0003	993	52	24	7	14	0	6	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0004	993	18	0	1	16	0	1	copy fasta	EMC1	chr1	19210660	19256524