JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EMC1_chr1_19210660_19256524	0/0	a0005	993	7	6	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0006	993	3	0	0	1	0	2	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0007	993	1	0	0	0	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0008	993	1	1	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0009	993	1	0	0	0	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0010	993	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0011	993	1	0	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0012	993	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0013	993	1	1	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	a0014	993	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC2_chr8_108438624_108494196	1/1	a0001	297	362	89	64	143	18	46	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	a0002	297	1	1	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	a0003	297	1	0	0	1	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC3_chr3_9957682_9991841	1/1	a0001	261	320	92	64	124	6	32	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	a0002	250	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	a0003	261	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC4_chr15_34220016_34235156	1/1	a0001	183	362	94	74	136	14	42	copy fasta	EMC4	chr15	34220016	34235156
EMC6_chr17_3663812_3674665	1/1	a0001	110	412	85	80	182	16	47	copy fasta	EMC6	chr17	3663812	3674665
EMC6_chr17_3663812_3674665	0/0	a0002	110	1	1	0	0	0	0	copy fasta	EMC6	chr17	3663812	3674665
EMC6_chr17_3663812_3674665	0/0	a0003	110	1	0	0	0	0	1	copy fasta	EMC6	chr17	3663812	3674665
EMC7_chr15_34079017_34106862	1/1	a0001	242	407	92	78	180	14	41	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	a0002	242	1	0	0	0	0	1	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	a0003	242	1	0	0	1	0	0	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	a0004	242	1	0	0	1	0	0	copy fasta	EMC7	chr15	34079017	34106862
EMC8_chr16_85773624_85804544	1/1	a0001	210	408	92	64	188	18	44	copy fasta	EMC8	chr16	85773624	85804544
EMC9_chr14_24133965_24146591	1/1	a0001	208	418	96	78	183	15	44	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	0/0	a0002	208	2	0	0	0	0	2	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	0/0	a0003	208	1	0	0	0	1	0	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	0/0	a0004	208	1	0	0	1	0	0	copy fasta	EMC9	chr14	24133965	24146591
EMCN_chr4_100390341_100523022	1/1	a0001	261	166	63	40	31	7	23	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	a0002	260	89	18	24	35	0	12	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	a0003	261	4	3	1	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	a0004	261	2	0	1	0	1	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	a0005	261	1	0	0	0	0	1	copy fasta	EMCN	chr4	100390341	100523022
EMD_chrX_154374295_154386523	1/1	a0001	254	283	72	58	112	11	28	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	a0002	235	1	0	0	1	0	0	copy fasta	EMD	chrX	154374295	154386523
EME1_chr17_50368229_50386483	0/1	a0001	570	103	24	24	36	5	13	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	1/0	a0002	570	95	1	1	74	0	18	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0003	571	53	16	20	5	6	6	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0004	571	53	1	22	22	4	4	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0005	570	26	0	7	19	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0006	571	16	16	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0007	571	11	8	3	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0008	571	6	5	1	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0009	571	5	5	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0010	571	5	5	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0011	570	3	0	0	1	1	1	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0012	571	2	2	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0013	571	2	2	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0014	570	1	0	0	0	0	1	copy fasta	EME1	chr17	50368229	50386483