JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EME1_chr17_50368229_50386483	0/0	a0015	570	1	0	0	1	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0016	571	1	0	0	0	0	1	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	a0017	571	1	1	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME2_chr16_1767810_1786702	1/1	a0001	379	394	89	73	170	15	45	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0002	379	19	0	0	17	1	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0003	379	5	0	0	5	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0004	379	3	3	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0005	379	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0006	379	2	2	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0007	379	1	0	1	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0008	379	1	1	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0009	379	1	0	0	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0010	379	1	0	0	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	a0011	379	1	1	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EMG1_chr12_6965913_6984936	1/1	a0001	244	333	95	51	139	10	36	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	a0002	244	2	0	2	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	a0003	244	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	a0004	244	1	0	0	1	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	a0005	244	1	0	1	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMID1_chr22_29200896_29264597	0/0	a0001	443	144	55	13	65	1	10	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	1/1	a0002	443	143	19	28	52	9	33	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	a0003	443	37	16	2	19	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	a0004	443	22	3	7	12	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	a0005	443	1	0	0	0	0	1	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	a0006	443	1	1	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMILIN1_chr2_27073615_27091403	1/1	a0001	1016	290	73	64	109	16	26	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0002	1016	13	12	1	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0003	1016	3	3	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0004	1016	2	2	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0005	1016	2	2	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0006	1016	2	0	1	0	0	1	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0007	1016	1	0	0	1	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0008	1016	1	0	0	0	0	1	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0009	1016	1	0	0	1	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	a0010	1016	1	0	0	1	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN2_chr18_2842006_2921003	1/1	a0001	1053	355	58	66	169	18	42	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0002	1053	48	9	14	22	0	3	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0003	1053	12	10	2	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0004	1049	7	0	1	5	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0005	1053	4	4	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0006	1053	4	4	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0007	1053	2	0	2	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0008	1053	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0009	1053	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0010	1053	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0011	1053	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0012	1053	1	0	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0013	1053	1	0	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0014	1053	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0015	1053	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003