JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EMILIN2_chr18_2842006_2921003	0/0	a0016	1053	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0017	1053	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0018	1048	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0019	1053	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0020	1053	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0021	1053	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0022	1053	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0023	1053	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	a0024	1053	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN3_chr20_41354962_41371818	1/0	a0001	766	244	53	38	105	14	33	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0002	766	125	12	13	95	2	3	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0003	766	24	19	4	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0004	766	10	1	7	1	1	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0005	766	8	0	0	7	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0006	773	3	3	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0007	766	3	0	2	0	1	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0008	766	2	0	0	2	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0009	766	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/1	a0010	766	1	0	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0011	766	1	1	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0012	766	1	0	1	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0013	766	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0014	766	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0015	766	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0016	766	1	0	1	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0017	458	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0018	766	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	a0019	766	1	1	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EML1_chr14_99788413_99947060	0/0	a0001	815	120	72	18	16	7	7	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	1/1	a0002	815	86	4	21	48	2	9	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	a0003	815	77	8	19	43	1	6	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	a0004	815	2	2	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	a0005	815	1	0	0	1	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	a0006	815	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	a0007	815	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML2_chr19_45604400_45644397	1/1	a0001	649	254	47	55	109	13	28	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0002	649	39	5	2	29	0	3	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0003	649	32	1	12	11	2	6	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0004	649	26	16	0	4	1	5	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0005	649	11	8	2	0	0	1	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0006	649	6	5	1	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0007	649	2	0	0	2	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0008	649	2	2	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0009	649	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0010	101	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0011	649	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0012	649	1	1	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0013	649	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0014	649	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0015	649	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397