JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EML2_chr19_45604400_45644397	0/0	a0016	649	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0017	649	1	1	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	a0018	649	1	0	0	0	0	1	copy fasta	EML2	chr19	45604400	45644397
EML3_chr11_62597218_62617775	1/1	a0001	896	302	82	64	119	10	25	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	a0002	896	3	3	0	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	a0003	896	2	0	0	0	0	2	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	a0004	896	1	1	0	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	a0005	786	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	a0006	896	1	0	0	0	0	1	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	a0007	896	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	a0008	896	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML4_chr2_42164353_42337548	0/1	a0001	981	178	66	38	46	8	19	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	a0002	981	107	15	14	68	3	7	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	a0003	981	59	3	13	38	1	4	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	a0004	981	5	0	0	5	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	a0005	981	4	0	0	4	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	1/0	a0006	981	2	0	1	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	a0007	981	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	a0008	981	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	a0009	981	1	0	0	1	0	0	copy fasta	EML4	chr2	42164353	42337548
EML5_chr14_88607431_88797953	1/1	a0001	1977	235	73	43	77	11	29	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0002	1977	85	8	22	44	4	7	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0003	1977	3	3	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0004	1977	2	0	0	2	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0005	1977	1	0	0	0	1	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0006	1977	1	0	0	1	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0007	1977	1	1	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0008	1977	1	1	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0009	1977	1	0	0	1	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0010	1977	1	0	0	1	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	a0011	1977	1	0	1	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML6_chr2_54718662_54977025	1/1	a0001	1958	251	76	58	62	16	37	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0002	1958	4	4	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0003	1958	2	0	0	0	0	2	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0004	1958	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0005	1958	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0006	1958	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0007	1958	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0008	1958	1	0	0	0	0	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0009	1958	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	a0010	1958	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EMP1_chr12_13191726_13224941	1/1	a0001	157	435	91	80	200	14	48	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	a0002	157	6	0	3	0	3	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	a0003	157	2	0	1	0	1	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	a0004	157	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP2_chr16_10523422_10585598	1/1	a0001	167	393	83	70	174	14	50	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	a0002	167	8	8	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	a0003	167	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP3_chr19_48320552_48335553	1/1	a0001	163	369	92	69	154	12	40	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/0	a0002	163	7	0	3	0	4	0	copy fasta	EMP3	chr19	48320552	48335553