JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ENDOG_chr9_128813500_128827676	0/0	a0004	297	1	0	0	0	1	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	a0005	297	1	1	0	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	a0006	297	1	0	0	1	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	a0007	297	1	0	1	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOU_chr12_47704734_47730490	1/1	a0001	410	396	84	63	188	16	43	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0002	410	7	7	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0003	62	5	0	0	5	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0004	410	3	3	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0005	410	2	1	1	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0006	410	2	0	1	0	0	1	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0007	410	2	0	0	2	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0008	410	2	0	0	2	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0009	410	1	0	1	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0010	410	1	0	0	1	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	a0011	410	1	1	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOV_chr17_80410167_80443086	1/1	a0001	282	365	78	64	172	14	35	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0002	282	23	8	9	0	3	3	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0003	282	7	0	0	7	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0004	282	6	6	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0005	282	5	0	3	0	0	2	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0006	282	4	0	2	2	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0007	98	3	0	0	3	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0008	282	2	0	0	0	0	2	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0009	282	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0010	282	1	0	0	0	0	1	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0011	282	1	0	0	0	1	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0012	133	1	0	0	0	0	1	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	a0013	282	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENGASE_chr17_79069824_79093599	1/0	a0001	743	280	57	47	124	16	35	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0002	743	55	3	9	39	0	4	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0003	743	18	0	10	4	0	4	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0004	743	16	8	4	2	0	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0005	743	15	15	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0006	743	8	0	0	8	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0007	743	6	1	2	1	0	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0008	743	4	4	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0009	743	4	3	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/1	a0010	743	3	0	2	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0011	743	3	2	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0012	743	2	2	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0013	743	2	0	1	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0014	743	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0015	743	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0016	743	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	a0017	743	1	0	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENG_chr9_127810016_127859658	1/1	a0001	658	303	75	52	121	11	42	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0002	658	16	0	0	16	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0003	658	13	10	3	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0004	658	3	3	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0005	658	1	0	0	0	0	1	copy fasta	ENG	chr9	127810016	127859658