JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ENG_chr9_127810016_127859658	0/0	a0006	658	1	0	0	0	0	1	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0007	658	1	0	0	1	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0008	658	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0009	658	1	0	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0010	658	1	0	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0011	658	1	0	0	0	1	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0012	658	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	a0013	658	1	0	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENHO_chr9_34516043_34527990	1/1	a0001	76	415	94	88	178	14	39	copy fasta	ENHO	chr9	34516043	34527990
ENHO_chr9_34516043_34527990	0/0	a0002	76	1	0	0	0	0	1	copy fasta	ENHO	chr9	34516043	34527990
ENKD1_chr16_67657945_67671750	1/1	a0001	346	264	86	51	80	8	37	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	a0002	346	6	1	5	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	a0003	346	3	3	0	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	a0004	346	1	0	0	0	0	1	copy fasta	ENKD1	chr16	67657945	67671750
ENKUR_chr10_24976985_25021158	1/1	a0001	256	371	82	68	166	14	39	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	a0002	256	8	0	0	8	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	a0003	256	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	a0004	256	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	a0005	256	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	a0006	256	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	a0007	256	1	0	0	0	0	1	copy fasta	ENKUR	chr10	24976985	25021158
ENO1_chr1_8856000_8883686	1/1	a0001	434	412	92	69	189	12	48	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	a0002	434	1	0	1	0	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	a0003	434	1	0	0	1	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO2_chr12_6909580_6928697	1/1	a0001	434	375	81	58	172	14	48	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	a0002	434	1	1	0	0	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO3_chr17_4946119_4962129	1/1	a0001	434	194	39	15	108	10	20	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0002	434	140	37	29	69	1	4	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0003	434	95	10	35	26	5	19	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0004	434	4	4	0	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0005	434	2	0	0	2	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0006	442	1	0	0	1	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0007	434	1	0	0	0	0	1	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0008	434	1	0	0	1	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0009	434	1	0	1	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	a0010	434	1	0	0	1	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO4_chr10_116844499_116887601	1/1	a0001	625	387	82	72	178	14	39	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	a0002	625	9	0	0	9	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	a0003	625	1	0	0	0	0	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	a0004	625	1	0	0	1	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	a0005	625	1	1	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	a0006	625	1	1	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENOPH1_chr4_82425590_82466177	1/1	a0001	261	364	95	63	154	12	38	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	a0002	261	2	1	1	0	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOSF1_chr18_665318_717630	1/0	a0001	443	267	60	43	119	10	34	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/1	a0002	443	82	24	26	17	3	11	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	a0003	443	54	1	3	46	1	3	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	a0004	443	7	0	4	0	3	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	a0005	195	2	0	0	2	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	a0006	443	2	2	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630