Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADPRM_chr17_10692594_10716558	0/0	a0004	342	3	0	0	2	0	1	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	a0005	342	1	1	0	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	a0006	342	1	0	0	0	0	1	copy fasta	ADPRM	chr17	10692594	10716558
ADPRS_chr1_36083892_36098932	1/1	a0001	363	308	63	53	146	10	34	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	a0002	363	101	29	19	51	0	2	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	a0003	363	1	0	0	1	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADRA1A_chr8_26763809_26872278	0/1	a0001	466	247	69	31	120	7	19	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	1/0	a0002	466	104	20	26	30	8	19	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0003	466	14	3	5	5	0	1	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0004	466	7	0	1	6	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0005	466	4	0	4	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0006	466	2	0	2	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0007	466	2	0	1	0	1	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0008	466	2	0	2	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0009	466	2	0	2	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0010	466	1	0	0	0	0	1	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0011	466	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0012	466	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	a0013	466	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1B_chr5_159911482_159978012	1/1	a0001	520	382	88	70	170	12	40	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	a0002	520	1	1	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	a0003	520	1	1	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1D_chr20_4215630_4254287	1/1	a0001	572	345	81	47	174	14	27	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	a0002	572	100	16	25	42	4	13	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	a0003	572	2	0	0	0	0	2	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	a0004	572	1	0	0	1	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	a0005	572	1	0	0	1	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	a0006	572	1	1	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	a0007	572	1	0	1	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	a0008	572	1	0	1	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA2A_chr10_111072029_111085907	1/1	a0001	465	419	82	74	210	9	42	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	a0002	465	6	6	0	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	a0003	465	4	0	0	0	0	4	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	a0004	465	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	a0005	465	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	a0006	465	1	0	0	0	1	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2B_chr2_96107876_96121571	1/0	a0001	450	263	80	42	105	6	29	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	a0002	447	121	8	35	65	2	11	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	a0003	212	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	a0004	450	1	0	1	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/1	a0005	450	1	0	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	a0006	447	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	a0007	450	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	a0008	450	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2C_chr4_3761385_3773526	1/1	a0001	462	350	61	72	154	18	43	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	a0002	458	62	34	9	16	0	3	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	a0003	458	2	0	0	2	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	a0004	458	1	0	0	1	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	a0005	440	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	a0006	458	1	0	0	1	0	0	copy fasta	ADRA2C	chr4	3761385	3773526